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Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume fd6e1268-5743-4222-b509-7425b06c921d -name ecanigur-nextflow-pipeline-template-git-2026-01-22t05-00-06z
Error Report
Error executing process > 'VALIDATE_DATA:VALIDATE_FILE (HCC1395N)'
Caused by:
Process `VALIDATE_DATA:VALIDATE_FILE (HCC1395N)` terminated with an error exit status (137)
Command executed:
echo "=== Validating HCC1395N ==="
validation_passed="false"
all_valid=true
for fastq in SRR7890919_WES_HCC1395BL-EA_normal_1.fastq.gz SRR7890919_WES_HCC1395BL-EA_normal_2.fastq.gz; do
if [[ ! -f "${fastq}" ]]; then
echo "ERROR: File not found: ${fastq}"
all_valid=false
elif [[ ! -s "${fastq}" ]]; then
echo "ERROR: File is empty: ${fastq}"
all_valid=false
else
echo "PASS: ${fastq}"
fi
done
if ${all_valid}; then
validation_passed="true"
fi
echo "Validation: ${validation_passed}"
echo "${validation_passed}" > validation_status.txt
Command exit status:
137
Command output:
(empty)
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/6a54f6c4a37dee284087a83b4424f5
Container:
quay.io/biocontainers/arriba:2.4.0--h0033a41_2
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- fd6e1268-5743-4222-b509-7425b06c921d
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Output Dir
- Deleted by @ecanigur on 2026-06-03 9:10 AM. List of old outputs
- Submitted By
- ecanigur
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $0.10
- Outputs
- Deleted
- Started
- Jan 21, 2026 9:00 PM
- Completed
- Jan 21, 2026 9:02 PM
- Duration
- 1m 45s
- Post-workflow Transfer
- 2s
- Exit Status
- 137
- Peak Tasks / CPU / Mem
- 8 / 28 / 84.0 GB