succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 4s 2s 0s 1s 0 bytes 90% 72.0 KB 195 bytes 0 bytes 0 bytes 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 4s 2s 0s 1s 0 bytes 62% 93.7 KB 474 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientA_normal) 10s 1s 0s 8s 5.4 MB 87% 159.8 KB 751 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientB_normal) 13s 1s 0s 11s 5.6 MB 111% 160.5 KB 755 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientC_normal) 13s 1s 0s 11s 5.5 MB 113% 160.1 KB 753 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientA_normal) 31s 4s 0s 26s 3.6 MB 98% 160.1 KB 755 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientB_normal) 31s 3s 0s 27s 3.6 MB 90% 161.0 KB 758 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientC_normal) 36s 8s 0s 27s 3.5 MB 118% 162.2 KB 762 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (PatientA_normal;tnseq) 2s 1s - - 3.3 MB 2312% 104.5 KB 665 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (PatientB_normal;tnseq) 2s 1s - - 3.1 MB 2327% 103.7 KB 659 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientA_normal) 11s 2s 0s 8s 3.7 MB 2630% 115.9 KB 714 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientB_normal) 14s 2s 0s 11s 5.6 MB 2247% 115.9 KB 714 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientC_normal) 14s 2s 0s 11s 5.5 MB 2214% 116.3 KB 716 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientA_normal) 2s 1s - - 3.3 MB 1888% 109.5 KB 711 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientB_normal) 3s 1s - - 3.3 MB 2061% 109.8 KB 713 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientC_normal) 3s 1s - - 3.3 MB 2117% 109.5 KB 711 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 16s 6s 0s 9s 5.3 MB 1983% 115.3 KB 695 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 3s 1s - - 3.2 MB 2306% 109.1 KB 695 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (PatientA_normal) 18s 7s 0s 10s 5.4 MB 2207% 164.3 KB 697 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (PatientB_normal) 14s 2s 0s 11s 5.2 MB 2244% 115.7 KB 699 bytes 0 bytes 8.0 KB 1
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