succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 3s 2s 0s 0s 0 bytes 139% 62.9 KB 182 bytes 0 bytes 0 bytes 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 16s 13s 0s 2s 0 bytes 67% 139.7 KB 467 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientA_normal) 11s 1s 0s 9s 3.6 MB 103% 156.5 KB 745 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientB_normal) 13s 2s 0s 10s 7.0 MB 113% 156.5 KB 745 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientC_normal) 31s 22s 0s 8s 7.6 MB 93% 154.0 KB 739 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientA_normal) 1m 20s 48s 0s 31s 3.5 MB 117% 160.4 KB 748 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientB_normal) 1m 20s 45s 0s 34s 3.6 MB 102% 160.4 KB 748 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientC_normal) 1m 18s 46s 0s 31s 3.7 MB 112% 160.5 KB 748 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (PatientA_normal;tnseq) 3s 1s - - 3.3 MB 2149% 104.0 KB 658 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (PatientB_normal;tnseq) 3s 2s - - 4.7 MB 1954% 104.0 KB 658 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientA_normal) 21s 6s 0s 14s 3.4 MB 808% 106.7 KB 705 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientB_normal) 19s 10s 0s 8s 3.7 MB 2098% 109.6 KB 704 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientC_normal) 11s 2s 0s 8s 5.4 MB 1799% 161.1 KB 704 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientA_normal) 2s 1s - - 3.3 MB 1785% 108.8 KB 703 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientB_normal) 3s 2s - - 3.3 MB 766% 103.3 KB 701 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientC_normal) 2s 1s - - 3.3 MB 2133% 108.8 KB 703 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 36s 26s 0s 9s 3.6 MB 120% 104.6 KB 684 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 24s 22s - - 3.3 MB 320% 100.1 KB 683 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (PatientA_normal) 12s 2s 0s 9s 3.6 MB 2506% 162.0 KB 696 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (PatientB_normal) 16s 6s 0s 9s 5.3 MB 3248% 113.2 KB 698 bytes 0 bytes 8.0 KB 1
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