|
succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
4s |
3s |
0s |
0s |
0 bytes |
173% |
71.2 KB |
192 bytes |
0 bytes |
0 bytes |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
|
18s |
16s |
0s |
1s |
0 bytes |
173% |
83.8 KB |
456 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_GVCFS (PatientA_normal)
|
14s |
12s |
1s |
1s |
6.5 MB |
267% |
46.6 MB |
1.4 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_GVCFS (PatientB_normal)
|
15s |
12s |
1s |
2s |
12.1 MB |
269% |
46.6 MB |
1.4 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_GVCFS (PatientC_normal)
|
14s |
11s |
- |
- |
4.9 MB |
259% |
46.6 MB |
1.4 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (PatientA_normal)
|
14s |
12s |
1s |
1s |
10.4 MB |
257% |
46.6 MB |
1.4 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (PatientB_normal)
|
15s |
13s |
1s |
1s |
12.2 MB |
264% |
46.6 MB |
1.4 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (PatientC_normal)
|
15s |
13s |
1s |
1s |
12.2 MB |
271% |
46.6 MB |
1.4 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientA_normal;chr14_64122012-64122133.bed)
|
27s |
12s |
0s |
14s |
3.6 MB |
109% |
164.1 KB |
906 bytes |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientA_normal;chr1_69091-70008.bed)
|
16s |
4s |
0s |
11s |
3.6 MB |
106% |
164.7 KB |
906 bytes |
4.0 KB |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientA_normal;chr19_47340800-47341813.bed)
|
15s |
5s |
0s |
9s |
3.5 MB |
86% |
164.8 KB |
908 bytes |
4.0 KB |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientA_normal;chr4_30730753-30730788.bed)
|
14s |
4s |
0s |
9s |
3.5 MB |
105% |
164.0 KB |
906 bytes |
4.0 KB |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientA_normal;chr8_93795409-93795507.bed)
|
14s |
4s |
0s |
9s |
3.4 MB |
86% |
164.7 KB |
896 bytes |
4.0 KB |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientB_normal;chr14_64122012-64122133.bed)
|
14s |
5s |
0s |
8s |
3.5 MB |
105% |
164.1 KB |
903 bytes |
4.0 KB |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientB_normal;chr1_69091-70008.bed)
|
14s |
4s |
0s |
9s |
3.6 MB |
91% |
164.0 KB |
902 bytes |
4.0 KB |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientB_normal;chr19_47340800-47341813.bed)
|
17s |
5s |
0s |
11s |
3.6 MB |
106% |
164.8 KB |
906 bytes |
4.0 KB |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientB_normal;chr4_30730753-30730788.bed)
|
14s |
4s |
0s |
9s |
3.6 MB |
89% |
164.0 KB |
902 bytes |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientB_normal;chr8_93795409-93795507.bed)
|
16s |
4s |
0s |
11s |
3.6 MB |
88% |
164.0 KB |
905 bytes |
4.0 KB |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientC_normal;chr14_64122012-64122133.bed)
|
17s |
5s |
0s |
11s |
3.6 MB |
90% |
164.8 KB |
905 bytes |
4.0 KB |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (PatientC_normal;chr1_69091-70008.bed)
|
16s |
4s |
0s |
11s |
3.5 MB |
86% |
164.7 KB |
908 bytes |
4.0 KB |
12.0 KB |
1 |