20251230_LH00166_0226_B23H33FLT4 DAQ-UMI Report

Report summarizing key metrics from DAQ-UMI pipeline

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Report generated on 2026-02-17, 17:03 UTC based on data in: /tmp/nxf.GKfHvk1qSI

General Statistics

Note: Fastp columns represent a single lane; umi-tools columns derived from chr1 only

Showing ³²/₃₂ rows and ¹⁹/₃₀ columns.

Sample Name	Mean Cov.	Min Cov.	Max Cov.	Mb Total Coverage Bases	Genome length	Fold Enrichment	Median Target Coverage	Target Bases ≥ 30X	Insert Size	Mean Insert Size	Error rate	Non-primary	Reads mapped	% Mapped	% Proper pairs	% MapQ 0 reads	Total seqs	Mean insert	% Dups	M Unique Reads	% Pass Dedup	% Duplication	% > Q30	Mb Q30 bases	Reads After Filtering	GC content	% PF	% Adapter	Mean R1 Length	Mean R2 Length
LOW_FF-D0001384																						8.7%	96.1%	100701.9Mb	737.2M	50.1%	99.1%	7.1%	150.0bp	150.0bp
NTC-D0002235	988.4X	0.0X	37860.0X	33760.6Mb	34156490	47X	966.0X	98%	175bp	191bp	0.82%	0.0M	699.7M	100.0%	85.3%	6.1%	699.7M	213.1bp	72%	36.3M	39.2%	4.8%	96.2%	30655.1Mb	225.8M	50.1%	99.1%	10.4%	150.0bp	150.0bp
T13-D0003273	1612.7X	0.0X	73733.0X	55083.7Mb	34156490	48X	1563.0X	99%	177bp	199bp	0.78%	0.0M	1075.9M	100.0%	94.0%	5.1%	1075.9M	222.8bp	59%	56.2M	55.7%	3.1%	95.9%	32102.6Mb	235.2M	50.2%	98.7%	6.3%	150.0bp	150.0bp
T13-D0003573	2601.9X	0.0X	199292.0X	88871.5Mb	34156490	51X	2430.0X	98%	168bp	171bp	0.81%	0.0M	1746.6M	100.0%	84.0%	5.6%	1746.6M	194.0bp	57%	92.4M	60.9%	3.8%	96.1%	48754.6Mb	360.6M	51.9%	99.1%	12.4%	150.0bp	150.0bp
T18-D0003095	1074.5X	0.0X	46523.0X	36699.8Mb	34156490	46X	1047.0X	98%	176bp	198bp	0.81%	0.0M	758.6M	100.0%	90.2%	6.2%	758.6M	222.9bp	75%	39.3M	35.7%	5.8%	96.1%	36617.1Mb	268.7M	51.2%	99.1%	9.2%	150.0bp	150.0bp
T18-D0003137	999.7X	0.0X	48402.0X	34145.6Mb	34156490	46X	971.0X	99%	181bp	214bp	0.83%	0.0M	686.4M	100.0%	98.2%	5.2%	686.4M	236.7bp	64%	36.0M	47.4%	3.8%	95.7%	24281.2Mb	180.5M	50.7%	98.9%	10.9%	150.0bp	150.0bp
T21-D0002837	1274.4X	0.0X	57377.0X	43530.2Mb	34156490	45X	1241.0X	99%	182bp	215bp	0.81%	0.0M	878.2M	100.0%	98.0%	5.4%	878.2M	239.4bp	68%	46.3M	43.7%	4.2%	95.6%	33285.8Mb	245.9M	50.0%	98.8%	8.9%	150.0bp	150.0bp
T21-D0002994	1268.8X	0.0X	84737.0X	43337.2Mb	34156490	48X	1231.0X	98%	173bp	189bp	0.82%	0.0M	875.3M	100.0%	87.2%	5.8%	875.3M	208.6bp	66%	45.7M	47.2%	4.2%	95.9%	30968.1Mb	229.6M	50.8%	99.1%	12.6%	150.0bp	150.0bp
T21-D0003169	1511.8X	0.0X	95084.0X	51639.1Mb	34156490	44X	1474.0X	99%	180bp	210bp	0.84%	0.0M	1085.4M	100.0%	96.3%	6.3%	1085.4M	236.5bp	77%	55.9M	34.0%	6.9%	95.8%	54009.7Mb	398.0M	50.2%	98.9%	8.6%	150.0bp	150.0bp
filler-D0000114	923.6X	0.0X	29609.0X	31547.7Mb	34156490	46X	902.0X	98%	177bp	202bp	0.82%	0.0M	656.7M	100.0%	92.0%	5.9%	656.7M	224.3bp	74%	33.9M	36.8%	4.7%	95.8%	29440.3Mb	217.2M	49.8%	98.9%	9.4%	150.0bp	150.0bp
filler-D0000192	1384.5X	0.0X	87933.0X	47290.6Mb	34156490	48X	1341.0X	98%	172bp	181bp	0.80%	0.0M	957.9M	100.0%	83.2%	5.9%	957.9M	209.3bp	68%	50.2M	45.9%	3.4%	96.0%	34424.5Mb	253.9M	50.9%	98.8%	10.2%	150.0bp	150.0bp
filler-D0000329	1057.7X	0.0X	32346.0X	36128.5Mb	34156490	47X	1035.0X	99%	176bp	199bp	0.81%	0.0M	733.9M	100.0%	93.5%	5.4%	733.9M	217.3bp	67%	38.2M	45.9%	3.4%	95.9%	27084.3Mb	199.5M	49.7%	99.0%	9.9%	150.0bp	150.0bp
filler-D0000548	969.8X	0.0X	54122.0X	33124.9Mb	34156490	45X	945.0X	99%	182bp	217bp	0.81%	0.0M	675.5M	100.0%	98.1%	5.5%	675.5M	243.4bp	68%	35.1M	43.2%	3.4%	95.6%	25825.6Mb	190.6M	49.5%	98.5%	8.4%	150.0bp	150.0bp
filler-D0000555	793.1X	0.0X	28204.0X	27090.2Mb	34156490	46X	773.0X	98%	178bp	206bp	0.81%	0.0M	551.4M	100.0%	95.7%	5.3%	551.4M	231.0bp	65%	28.9M	46.9%	3.7%	95.8%	19543.2Mb	144.2M	49.7%	98.8%	9.5%	150.0bp	150.0bp
filler-D0000644	933.0X	0.0X	39209.0X	31867.7Mb	34156490	46X	911.0X	98%	178bp	200bp	0.81%	0.0M	658.2M	100.0%	90.9%	5.9%	658.2M	224.2bp	73%	34.3M	38.6%	4.9%	96.0%	28748.8Mb	211.9M	50.4%	99.0%	8.8%	150.0bp	150.0bp
filler-D0000668	739.9X	0.0X	43779.0X	25271.5Mb	34156490	45X	721.0X	98%	178bp	207bp	0.84%	0.0M	528.1M	100.0%	95.2%	5.6%	528.1M	232.4bp	70%	27.4M	40.7%	3.5%	95.6%	20995.5Mb	156.9M	50.0%	98.8%	13.5%	150.0bp	150.0bp
filler-D0000674	991.1X	0.0X	34360.0X	33852.9Mb	34156490	46X	964.0X	99%	183bp	217bp	0.80%	0.0M	679.4M	100.0%	98.7%	5.3%	679.4M	236.8bp	65%	35.4M	46.8%	3.6%	95.8%	24907.6Mb	183.6M	49.7%	98.9%	8.5%	150.0bp	150.0bp
filler-D0000822	1518.7X	0.0X	107902.0X	51872.6Mb	34156490	48X	1472.0X	98%	175bp	192bp	0.80%	0.0M	1030.4M	100.0%	90.0%	5.5%	1030.4M	217.4bp	61%	53.7M	53.0%	3.8%	96.0%	33258.9Mb	244.4M	50.3%	99.1%	8.8%	150.0bp	150.0bp
filler-D0001021	1085.5X	0.0X	50404.0X	37075.7Mb	34156490	46X	1063.0X	98%	178bp	204bp	0.81%	0.0M	749.5M	100.0%	94.6%	5.3%	749.5M	223.5bp	68%	38.9M	44.6%	3.4%	95.7%	27630.1Mb	203.8M	50.0%	99.1%	9.0%	150.0bp	150.0bp
filler-D0001217																						1.3%	96.0%	0.0Mb	0.0M	50.0%	97.5%	8.9%	150.0bp	150.0bp
filler-D0001310	1604.4X	0.0X	104709.0X	54800.7Mb	34156490	48X	1556.0X	99%	176bp	198bp	0.78%	0.0M	1079.5M	100.0%	93.9%	5.5%	1079.5M	220.1bp	62%	56.1M	51.9%	3.9%	96.1%	35825.7Mb	262.8M	50.4%	99.0%	8.1%	150.0bp	150.0bp
filler-D0001324	1042.5X	0.0X	52338.0X	35609.9Mb	34156490	46X	1018.0X	98%	178bp	201bp	0.80%	0.0M	728.1M	100.0%	92.3%	5.7%	728.1M	224.3bp	71%	37.6M	41.2%	3.6%	95.9%	29119.5Mb	214.7M	50.2%	98.7%	8.8%	150.0bp	150.0bp
filler-D0001376	719.2X	0.0X	47758.0X	24565.9Mb	34156490	47X	700.0X	98%	176bp	197bp	0.82%	0.0M	507.9M	100.0%	89.7%	6.0%	507.9M	213.4bp	69%	26.4M	42.2%	3.7%	96.0%	20173.9Mb	149.9M	50.5%	99.0%	13.5%	150.0bp	150.0bp
filler-D0001664																						0.0%	0.0%	0.0Mb	0.0M	0.0%			0.0bp	0.0bp
filler-D0001776	700.0X	0.0X	16475.0X	23908.5Mb	34156490	44X	682.0X	99%	180bp	208bp	0.81%	0.0M	506.3M	100.0%	93.7%	6.2%	506.3M	234.0bp	76%	26.2M	33.2%	5.3%	95.8%	24923.6Mb	184.8M	50.0%	98.9%	10.9%	150.0bp	150.0bp
filler-D0002199	1579.6X	0.0X	45137.0X	53953.8Mb	34156490	48X	1531.0X	98%	174bp	188bp	0.80%	0.0M	1083.4M	100.0%	85.6%	5.6%	1083.4M	210.6bp	65%	57.1M	49.5%	4.2%	96.2%	37669.4Mb	277.5M	50.8%	99.1%	10.7%	150.0bp	150.0bp
filler-D0002285	680.7X	0.0X	32478.0X	23251.6Mb	34156490	45X	665.0X	98%	181bp	213bp	0.81%	0.0M	475.4M	100.0%	97.8%	5.4%	475.4M	237.0bp	68%	24.7M	42.9%	3.8%	95.8%	18511.5Mb	136.8M	49.9%	98.9%	9.6%	150.0bp	150.0bp
filler-D0002463	1276.2X	0.0X	48817.0X	43591.4Mb	34156490	48X	1243.0X	98%	173bp	186bp	0.81%	0.0M	891.6M	100.0%	84.5%	5.7%	891.6M	213.8bp	68%	46.3M	44.9%	3.7%	95.9%	33317.4Mb	245.9M	50.3%	99.0%	10.9%	150.0bp	150.0bp
filler-D0002606	1151.2X	0.0X	47344.0X	39322.6Mb	34156490	47X	1128.0X	99%	179bp	203bp	0.82%	0.0M	797.8M	100.0%	93.1%	5.4%	797.8M	222.6bp	69%	41.5M	43.6%	3.8%	95.8%	30107.9Mb	221.9M	49.7%	98.6%	8.7%	150.0bp	150.0bp
filler-D0002607	938.9X	0.0X	61224.0X	32069.2Mb	34156490	45X	917.0X	99%	182bp	212bp	0.82%	0.0M	654.6M	100.0%	97.3%	5.5%	654.6M	232.5bp	70%	33.9M	41.0%	4.5%	95.9%	27110.0Mb	200.7M	50.1%	98.9%	10.2%	150.0bp	150.0bp
filler-D0002686	913.3X	0.0X	47776.0X	31195.5Mb	34156490	47X	889.0X	98%	176bp	193bp	0.82%	0.0M	643.7M	100.0%	86.0%	6.0%	643.7M	216.2bp	70%	33.4M	41.8%	4.4%	95.9%	25893.2Mb	191.8M	50.0%	98.9%	11.3%	150.0bp	150.0bp
filler-D0002735	2134.6X	0.0X	123824.0X	72908.8Mb	34156490	46X	2076.0X	99%	184bp	218bp	0.78%	0.0M	1407.9M	100.0%	99.0%	4.9%	1407.9M	237.5bp	61%	73.8M	54.2%	4.8%	96.0%	45275.1Mb	330.4M	50.0%	99.0%	4.7%	150.0bp	150.0bp

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: general_stats_table_table

Sort	Group	Column	Description	ID	Scale
\|\|	Mosdepth	Mean Cov.	Mean coverage	`mosdepth-mean_coverage`
\|\|	Mosdepth	Min Cov.	Minimum coverage	`mosdepth-min_coverage`
\|\|	Mosdepth	Max Cov.	Maximum coverage	`mosdepth-max_coverage`
\|\|	Mosdepth	Mb Total Coverage Bases	Total coverage of bases (millions)	`mosdepth-coverage_bases`	base_count
\|\|	Mosdepth	Genome length	Total length of the genome	`mosdepth-length`
\|\|	Picard: HsMetrics	Fold Enrichment	Fold Enrichment	`picard_hsmetrics-FOLD_ENRICHMENT`
\|\|	Picard: HsMetrics	Median Target Coverage	The median coverage of reads that mapped to target regions of an experiment.	`picard_hsmetrics-MEDIAN_TARGET_COVERAGE`
\|\|	Picard: HsMetrics	Target Bases ≥ 30X	Percent of target bases with coverage ≥ 30X	`picard_hsmetrics-picard_target_bases_30X`
\|\|	Picard: InsertSizeMetrics	Insert Size	Median Insert Size, all read orientations (bp)	`picard_insertsizemetrics-summed_median`
\|\|	Picard: InsertSizeMetrics	Mean Insert Size	Mean Insert Size, all read orientations (bp)	`picard_insertsizemetrics-summed_mean`
\|\|	Samtools: stats	Error rate	Error rate: mismatches (NM) / bases mapped (CIGAR)	`samtools_stats-error_rate`
\|\|	Samtools: stats	Non-primary	Non-primary alignments (millions)	`samtools_stats-non_primary_alignments`	read_count
\|\|	Samtools: stats	Reads mapped	Reads mapped in the bam file (millions)	`samtools_stats-reads_mapped`	read_count
\|\|	Samtools: stats	% Mapped	% Mapped reads	`samtools_stats-reads_mapped_percent`
\|\|	Samtools: stats	% Proper pairs	% Properly paired reads	`samtools_stats-reads_properly_paired_percent`
\|\|	Samtools: stats	% MapQ 0 reads	% of reads that are ambiguously placed (MapQ=0)	`samtools_stats-reads_MQ0_percent`
\|\|	Samtools: stats	Total seqs	Total sequences in the bam file (millions)	`samtools_stats-raw_total_sequences`	read_count
\|\|	Samtools: stats	Mean insert	Average insert size	`samtools_stats-insert_size_average`
\|\|	Sambamba: markdup	% Dups	Rate of Duplication per Sample	`sambamba_markdup-duplicate_rate`
\|\|	UMI-tools	M Unique Reads	Reads remaining after deduplication (millions)	`umi_tools-dedup_output_reads`	read_count
\|\|	UMI-tools	% Pass Dedup	% processed reads that passed deduplication	`umi_tools-dedup_percent_passing`
\|\|	fastp	% Duplication	Duplication rate before filtering	`fastp-pct_duplication`
\|\|	fastp	% > Q30	Percentage of reads > Q30 after filtering	`fastp-after_filtering_q30_rate`
\|\|	fastp	Mb Q30 bases	Bases > Q30 after filtering (millions)	`fastp-after_filtering_q30_bases`	base_count
\|\|	fastp	Reads After Filtering	Total reads after filtering (millions)	`fastp-filtering_result_passed_filter_reads`	read_count
\|\|	fastp	GC content	GC content after filtering	`fastp-after_filtering_gc_content`
\|\|	fastp	% PF	Percent reads passing filter	`fastp-pct_surviving`
\|\|	fastp	% Adapter	Percentage adapter-trimmed reads	`fastp-pct_adapter`
\|\|	fastp	Mean R1 Length	Mean read length of R1	`fastp-before_filtering_read1_mean_length`
\|\|	fastp	Mean R2 Length	Mean read length of R2	`fastp-before_filtering_read2_mean_length`

Seqtool

Seqtool performs qc analyses on sequencing alignments.

Basic Stats

Full summary statistics from seqtool output.

Showing ²⁹/₂₉ rows and ⁷⁰/₇₀ columns.

Sample Name	reads	unique_reads	pairs	proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frac_proper_pairs	frac_bases_gt30x	frac_bases_gt100x	frag_size_q20	frag_size_median	frag_size_q80	frag_size_mean	frag_size_std	n_q20	n_q25	n_q30	n_bases	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt700x	n_bases_gt30x	n_bases_gt100x	gc_0.0	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_1.0	bed	saturation_at_1000000_reads	roi_size	contam	n_sites	loglik	lrt	bed_base_count
NTC-D0002235_full_basic_stats	699654851.0	699654851.0	351494651.0	298306886.0	265157093.0	33149793.0	567807667.0	131847184.0	0.8	0.2	0.9	0.1	0.8	1.0	1.0	156.0	174.0	196.0	183.1	32.9	1.0	1.0	1.0	98898747853.0	930.1	0.2	36949.0	298.0	535.0	931.0	1251.0	1849.0	0.2	33878583.0	33786847.0	0.1	0.4	0.3	0.6	0.9	0.8	0.9	1.0	1.0	1.1	1.1	1.0	1.0	0.9	0.9	0.8	0.6	0.5	0.4	IDT.Exomev2.targets.hg38.bed	979605.0	33951579.0	0.0	5635.0	-127277.3	38989.3	34156137.0
T13-D0003273_full_basic_stats	1075896112.0	1075896112.0	540556732.0	505680370.0	459453378.0	46226992.0	886360760.0	189535352.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	164.0	179.0	299.0	211.9	61.5	1.0	1.0	1.0	153308568351.0	1505.3	0.2	65519.0	485.0	834.0	1492.0	2140.0	2927.0	0.0	33825616.0	33778962.0	0.1	0.4	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	0.9	0.9	0.8	0.6	0.5	0.4	IDT.Exomev2.targets.hg38.bed	985159.0	33951579.0	0.0	5436.0	-170925.5	40507.8	34156137.0
T13-D0003573_full_basic_stats	1746582148.0	1746582148.0	876304894.0	733450339.0	670773903.0	62676436.0	1509882937.0	236699211.0	0.9	0.1	0.9	0.1	0.8	1.0	1.0	151.0	168.0	181.0	165.6	18.6	1.0	1.0	1.0	246129771241.0	2477.2	0.2	65512.0	723.0	1295.0	2382.0	3880.0	5226.0	0.0	33894162.0	33807663.0	0.1	0.4	0.3	0.6	0.8	0.8	0.8	0.9	1.0	1.0	1.1	1.1	1.1	1.0	1.0	0.9	0.8	0.6	0.4	IDT.Exomev2.targets.hg38.bed	976260.0	33951579.0	0.0	5514.0	-289439.1	78900.8	34156137.0
T18-D0003095_full_basic_stats	758643441.0	758643441.0	381581113.0	342074927.0	303104404.0	38970523.0	605082489.0	153560952.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	159.0	176.0	241.0	200.5	52.0	1.0	1.0	1.0	107704141558.0	1003.7	0.2	44375.0	392.0	629.0	1000.0	1306.0	2039.0	0.1	33826050.0	33769128.0	0.1	0.4	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	0.9	0.9	0.8	0.6	0.5	0.4	IDT.Exomev2.targets.hg38.bed	981705.0	33951579.0	0.1	5300.0	-177461.6	68276.4	34156137.0
T18-D0003137_full_basic_stats	686403742.0	686403742.0	345413467.0	337013782.0	303927346.0	33086436.0	545362886.0	141040856.0	0.8	0.2	0.9	0.1	1.0	1.0	1.0	161.0	185.0	337.0	239.9	96.8	1.0	1.0	1.0	96701510527.0	922.0	0.2	45497.0	322.0	536.0	916.0	1279.0	1752.0	0.2	33815470.0	33765653.0	0.1	0.4	0.4	0.6	0.7	0.8	0.9	1.0	1.0	1.0	1.0	1.0	1.0	0.9	0.9	0.8	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	982605.0	33951579.0	0.0	5573.0	-120828.5	31250.1	34156137.0
T21-D0002837_full_basic_stats	878235959.0	878235959.0	442388906.0	430382926.0	386785287.0	43597639.0	692036145.0	186199814.0	0.8	0.2	0.9	0.1	1.0	1.0	1.0	164.0	187.0	340.0	242.9	95.4	1.0	1.0	1.0	124577795163.0	1175.5	0.2	54279.0	395.0	674.0	1170.0	1615.0	2268.0	0.1	33823799.0	33774591.0	0.1	0.5	0.4	0.6	0.7	0.8	1.0	1.0	1.1	1.0	1.0	1.0	0.9	0.9	0.8	0.7	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	984832.0	33951579.0	0.0	5597.0	-151851.9	39060.2	34156137.0
T21-D0002994_full_basic_stats	875282824.0	875282824.0	439767883.0	381521938.0	343793583.0	37728355.0	726358803.0	148924021.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	154.0	172.0	198.0	182.9	34.4	1.0	1.0	1.0	123406900563.0	1197.4	0.2	65526.0	442.0	716.0	1189.0	1620.0	2295.0	0.0	33886277.0	33833812.0	0.1	0.4	0.3	0.6	0.9	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	0.9	0.9	0.8	0.7	0.5	0.3	IDT.Exomev2.targets.hg38.bed	978148.0	33951579.0	0.1	5385.0	-281395.1	141433.8	34156137.0
T21-D0003169_full_basic_stats	1085380388.0	1085380388.0	546747188.0	522678354.0	459636268.0	63042086.0	836540605.0	248839783.0	0.8	0.2	0.9	0.1	1.0	1.0	1.0	164.0	184.0	331.0	233.9	87.7	1.0	1.0	1.0	154032906958.0	1397.1	0.2	65465.0	489.0	829.0	1394.0	1839.0	2775.0	0.0	33903457.0	33824817.0	0.1	0.5	0.4	0.7	0.8	0.9	1.0	1.0	1.0	1.0	1.0	1.0	1.0	0.9	0.9	0.8	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	985624.0	33951579.0	0.0	5776.0	-214211.8	64160.9	34156137.0
filler-D0000114_full_basic_stats	656701520.0	656701520.0	330316678.0	301954310.0	268074201.0	33880109.0	521916552.0	134784968.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	160.0	178.0	287.0	206.3	58.4	1.0	1.0	1.0	93125185991.0	861.3	0.2	28187.0	295.0	501.0	860.0	1153.0	1645.0	0.2	33820587.0	33767435.0	0.1	0.4	0.3	0.6	0.9	0.9	0.9	1.0	1.0	1.0	1.1	1.0	0.9	0.9	0.8	0.7	0.6	0.4	0.3	IDT.Exomev2.targets.hg38.bed	981959.0	33951579.0	0.1	5366.0	-139241.6	48497.7	34156137.0
filler-D0000192_full_basic_stats	957879344.0	957879344.0	481257215.0	398351686.0	358048413.0	40303273.0	795000417.0	162878927.0	0.8	0.2	0.9	0.1	0.8	1.0	1.0	156.0	171.0	189.0	174.8	23.3	1.0	1.0	1.0	135563798633.0	1309.0	0.2	65535.0	439.0	768.0	1299.0	1787.0	2584.0	0.0	33887318.0	33798142.0	0.1	0.4	0.3	0.6	0.9	0.8	0.9	0.9	1.0	1.0	1.1	1.1	1.0	0.9	0.9	0.8	0.7	0.5	0.3	IDT.Exomev2.targets.hg38.bed	980299.0	33951579.0	0.0	5520.0	-182108.7	60092.5	34156137.0
filler-D0000329_full_basic_stats	733886327.0	733886327.0	368673464.0	343055278.0	308025756.0	35029522.0	596957345.0	136928982.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	160.0	178.0	285.0	205.4	57.4	1.0	1.0	1.0	104034457155.0	990.2	0.2	30642.0	305.0	541.0	991.0	1377.0	1877.0	0.1	33881062.0	33795176.0	0.1	0.4	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.0	1.0	0.9	0.9	0.8	0.7	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	981673.0	33951579.0	0.1	5343.0	-171851.1	62326.8	34156137.0
filler-D0000548_full_basic_stats	675509885.0	675509885.0	340464901.0	331204272.0	296556112.0	34648160.0	526648875.0	148861010.0	0.8	0.2	0.9	0.1	1.0	1.0	1.0	164.0	187.0	342.0	246.9	99.0	1.0	1.0	1.0	95905548168.0	891.9	0.2	50732.0	281.0	488.0	890.0	1235.0	1684.0	0.2	33884739.0	33800244.0	0.1	0.4	0.3	0.6	0.7	0.8	1.0	1.1	1.1	1.0	1.0	1.0	0.9	0.8	0.8	0.7	0.4	0.4	0.4	IDT.Exomev2.targets.hg38.bed	984527.0	33951579.0	0.1	5447.0	-187227.5	77063.9	34156137.0
filler-D0000555_full_basic_stats	551378641.0	551378641.0	277467673.0	263816997.0	237074867.0	26742130.0	440505261.0	110873380.0	0.8	0.2	0.9	0.1	1.0	1.0	1.0	161.0	180.0	316.0	222.2	78.3	1.0	1.0	1.0	78143619468.0	737.4	0.2	26985.0	247.0	415.0	735.0	1026.0	1384.0	0.4	33809868.0	33758620.0	0.1	0.4	0.3	0.6	0.8	0.8	1.0	1.0	1.1	1.0	1.0	1.0	0.9	0.9	0.8	0.7	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	982153.0	33951579.0	0.0	5369.0	-110548.3	34845.7	34156137.0
filler-D0000644_full_basic_stats	658167422.0	658167422.0	330886844.0	299063536.0	265637527.0	33426009.0	524548507.0	133618915.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	162.0	179.0	245.0	203.4	53.6	1.0	1.0	1.0	93195131559.0	871.9	0.2	37440.0	291.0	507.0	871.0	1175.0	1717.0	0.2	33816287.0	33763351.0	0.1	0.4	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	0.9	0.9	0.8	0.6	0.5	0.4	IDT.Exomev2.targets.hg38.bed	981966.0	33951579.0	0.0	5571.0	-98509.5	23673.7	34156137.0
filler-D0000668_full_basic_stats	528051830.0	528051830.0	266135899.0	251319979.0	223815672.0	27504307.0	414817146.0	113234684.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	157.0	181.0	321.0	222.6	82.2	1.0	1.0	1.0	74204298527.0	686.4	0.2	41104.0	247.0	406.0	685.0	921.0	1300.0	0.5	33811273.0	33757035.0	0.1	0.4	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	0.9	0.9	0.8	0.7	0.5	0.4	0.3	IDT.Exomev2.targets.hg38.bed	976474.0	33951579.0	0.0	5527.0	-99932.2	29406.8	34156137.0
filler-D0000674_full_basic_stats	679437170.0	679437170.0	341713408.0	335233643.0	301651941.0	33581702.0	537528833.0	141908337.0	0.8	0.2	0.9	0.1	1.0	1.0	1.0	164.0	187.0	339.0	242.9	94.5	1.0	1.0	1.0	96332969290.0	912.2	0.2	31941.0	317.0	512.0	907.0	1262.0	1739.0	0.2	33880896.0	33811142.0	0.1	0.4	0.4	0.6	0.7	0.8	1.0	1.1	1.1	1.0	1.0	1.0	0.9	0.9	0.8	0.7	0.4	0.5	0.4	IDT.Exomev2.targets.hg38.bed	984276.0	33951579.0	0.1	5663.0	-220662.8	96823.8	34156137.0
filler-D0000822_full_basic_stats	1030417327.0	1030417327.0	517919835.0	463430399.0	419204332.0	44226067.0	849932867.0	180484460.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	160.0	176.0	215.0	196.6	46.8	1.0	1.0	1.0	146221790095.0	1423.4	0.2	65486.0	427.0	788.0	1413.0	2002.0	2733.0	0.0	33826661.0	33773279.0	0.1	0.4	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	0.9	0.9	0.8	0.6	0.5	0.4	IDT.Exomev2.targets.hg38.bed	983141.0	33951579.0	0.1	5497.0	-281886.0	115285.9	34156137.0
filler-D0001021_full_basic_stats	749485501.0	749485501.0	376510548.0	354325145.0	318063528.0	36261617.0	604680771.0	144804730.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	162.0	180.0	307.0	213.7	66.0	1.0	1.0	1.0	106357585358.0	1011.3	0.2	48123.0	347.0	589.0	1013.0	1362.0	1915.0	0.1	33856201.0	33781583.0	0.1	0.4	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.0	1.0	1.0	0.9	0.9	0.7	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	983256.0	33951579.0	0.0	5567.0	-124699.1	31817.4	34156137.0
filler-D0001310_full_basic_stats	1079535694.0	1079535694.0	542375875.0	507059516.0	458869567.0	48189949.0	887272980.0	192262714.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	162.0	178.0	296.0	209.2	60.8	1.0	1.0	1.0	153364917140.0	1496.5	0.2	65534.0	475.0	851.0	1485.0	2062.0	2893.0	0.0	33892822.0	33805993.0	0.1	0.4	0.4	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.0	1.0	1.0	0.9	0.9	0.8	0.6	0.6	0.4	IDT.Exomev2.targets.hg38.bed	984481.0	33951579.0	0.0	5370.0	-208906.3	61791.0	34156137.0
filler-D0001324_full_basic_stats	728124092.0	728124092.0	366144823.0	335842126.0	299768148.0	36073978.0	583437754.0	144686338.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	162.0	179.0	287.0	207.4	58.5	1.0	1.0	1.0	103221160967.0	972.9	0.2	49575.0	341.0	575.0	971.0	1308.0	1876.0	0.1	33822112.0	33770837.0	0.1	0.4	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	0.9	0.9	0.8	0.6	0.5	0.4	IDT.Exomev2.targets.hg38.bed	982921.0	33951579.0	0.0	5480.0	-134936.0	39888.5	34156137.0
filler-D0001376_full_basic_stats	507905962.0	507905962.0	255131123.0	227843144.0	203182019.0	24661125.0	412358401.0	95547561.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	154.0	175.0	209.0	190.8	44.2	1.0	1.0	1.0	71365941754.0	676.0	0.2	45889.0	251.0	408.0	673.0	899.0	1318.0	0.6	33858646.0	33769789.0	0.1	0.4	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	0.9	0.9	0.8	0.6	0.5	0.4	IDT.Exomev2.targets.hg38.bed	974759.0	33951579.0	0.1	5231.0	-119549.6	47581.1	34156137.0
filler-D0001776_full_basic_stats	506295480.0	506295480.0	254999200.0	237315841.0	208616454.0	28699387.0	391893533.0	114401947.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	161.0	181.0	314.0	218.8	73.9	1.0	1.0	1.0	71526378055.0	650.0	0.2	15422.0	236.0	387.0	649.0	859.0	1284.0	0.7	33872809.0	33779815.0	0.1	0.4	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.1	1.1	1.0	0.9	0.9	0.8	0.7	0.5	0.4	0.3	IDT.Exomev2.targets.hg38.bed	979058.0	33951579.0	0.1	5552.0	-115364.5	42083.1	34156137.0
filler-D0002199_full_basic_stats	1083367904.0	1083367904.0	544262850.0	463406785.0	418517251.0	44889534.0	900534881.0	182833023.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	156.0	173.0	194.0	180.8	30.2	1.0	1.0	1.0	153045662357.0	1492.2	0.2	43999.0	508.0	863.0	1480.0	2076.0	2952.0	0.0	33888631.0	33808959.0	0.1	0.4	0.3	0.6	0.9	0.8	0.9	0.9	1.0	1.0	1.1	1.0	1.0	0.9	0.9	0.8	0.7	0.5	0.4	IDT.Exomev2.targets.hg38.bed	980575.0	33951579.0	0.1	5315.0	-237155.8	87727.6	34156137.0
filler-D0002285_full_basic_stats	475391520.0	475391520.0	239283341.0	232440367.0	207967079.0	24473288.0	373527351.0	101864169.0	0.8	0.2	0.9	0.1	1.0	1.0	1.0	163.0	185.0	334.0	237.6	92.0	1.0	1.0	1.0	67313876082.0	628.5	0.2	30542.0	214.0	363.0	628.0	854.0	1173.0	0.7	33803001.0	33751091.0	0.1	0.4	0.3	0.6	0.7	0.8	1.0	1.1	1.1	1.0	1.0	1.0	0.9	0.9	0.8	0.7	0.5	0.4	0.4	IDT.Exomev2.targets.hg38.bed	981618.0	33951579.0	0.1	5412.0	-115711.8	42198.1	34156137.0
filler-D0002463_full_basic_stats	891567379.0	891567379.0	448195625.0	376900245.0	338405631.0	38494614.0	732700018.0	158867361.0	0.8	0.2	0.9	0.1	0.8	1.0	1.0	155.0	172.0	193.0	179.5	29.1	1.0	1.0	1.0	126152800097.0	1205.5	0.2	47677.0	406.0	694.0	1203.0	1641.0	2359.0	0.1	33893274.0	33811088.0	0.1	0.4	0.3	0.6	0.9	0.8	0.9	1.0	1.0	1.0	1.1	1.0	1.0	0.9	0.9	0.8	0.6	0.5	0.4	IDT.Exomev2.targets.hg38.bed	979131.0	33951579.0	0.1	5437.0	-199449.3	77245.4	34156137.0
filler-D0002606_full_basic_stats	797785469.0	797785469.0	400956062.0	371540515.0	333309908.0	38230607.0	644180848.0	153604621.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	162.0	180.0	291.0	208.6	59.4	1.0	1.0	1.0	113178128257.0	1075.0	0.2	44999.0	342.0	606.0	1077.0	1465.0	2021.0	0.1	33889035.0	33804853.0	0.1	0.4	0.3	0.6	0.8	0.8	0.9	1.0	1.0	1.0	1.1	1.0	0.9	0.9	0.8	0.7	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	982932.0	33951579.0	0.1	5362.0	-189060.6	70466.6	34156137.0
filler-D0002607_full_basic_stats	654627651.0	654627651.0	329379414.0	318501328.0	284896982.0	33604346.0	517251926.0	137375725.0	0.8	0.2	0.9	0.1	1.0	1.0	1.0	163.0	185.0	331.0	232.1	87.5	1.0	1.0	1.0	92393044999.0	869.9	0.2	58579.0	298.0	508.0	869.0	1167.0	1620.0	0.2	33815284.0	33763899.0	0.1	0.4	0.3	0.6	0.7	0.8	1.0	1.0	1.1	1.0	1.0	1.0	0.9	0.9	0.8	0.7	0.5	0.5	0.4	IDT.Exomev2.targets.hg38.bed	982650.0	33951579.0	0.1	5516.0	-168775.8	63841.6	34156137.0
filler-D0002686_full_basic_stats	643663140.0	643663140.0	323605114.0	276903455.0	246968616.0	29934839.0	522188383.0	121474757.0	0.8	0.2	0.9	0.1	0.9	1.0	1.0	157.0	175.0	200.0	186.1	36.0	1.0	1.0	1.0	90839226134.0	859.1	0.2	46081.0	282.0	488.0	857.0	1167.0	1692.0	0.2	33814225.0	33761494.0	0.1	0.4	0.3	0.6	0.9	0.8	0.9	1.0	1.0	1.1	1.1	1.0	1.0	0.9	0.8	0.8	0.6	0.5	0.4	IDT.Exomev2.targets.hg38.bed	978952.0	33951579.0	0.0	5364.0	-117232.6	37512.4	34156137.0
filler-D0002735_full_basic_stats	1407940351.0	1407940351.0	707614159.0	696823644.0	632299908.0	64523736.0	1132655397.0	275284954.0	0.8	0.2	0.9	0.1	1.0	1.0	1.0	168.0	189.0	343.0	245.5	92.0	1.0	1.0	1.0	201180841443.0	1964.6	0.2	65515.0	602.0	1080.0	1954.0	2774.0	3744.0	0.0	33836973.0	33786944.0	0.1	0.5	0.4	0.6	0.7	0.8	1.0	1.1	1.1	1.0	1.0	1.0	0.9	0.9	0.9	0.7	0.5	0.5	0.5	IDT.Exomev2.targets.hg38.bed	988096.0	33951579.0	0.0	5765.0	-216347.5	44524.4	34156137.0

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: seqtool_full_basic_stats_table_table

Sort	Column	Description	ID
\|\|	reads	reads	`seqtool-reads`
\|\|	unmapped	unmapped	`seqtool-unmapped`
\|\|	unique_reads	unique_reads	`seqtool-unique_reads`
\|\|	pairs	pairs	`seqtool-pairs`
\|\|	proper_pairs	proper_pairs	`seqtool-proper_pairs`
\|\|	pairs_on_target	pairs_on_target	`seqtool-pairs_on_target`
\|\|	pairs_off_target	pairs_off_target	`seqtool-pairs_off_target`
\|\|	reads_on_target	reads_on_target	`seqtool-reads_on_target`
\|\|	reads_off_target	reads_off_target	`seqtool-reads_off_target`
\|\|	dupes	dupes	`seqtool-dupes`
\|\|	frac_unmapped	frac_unmapped	`seqtool-frac_unmapped`
\|\|	frac_dupes	frac_dupes	`seqtool-frac_dupes`
\|\|	frac_reads_on_target	frac_reads_on_target	`seqtool-frac_reads_on_target`
\|\|	frac_reads_off_target	frac_reads_off_target	`seqtool-frac_reads_off_target`
\|\|	frac_pairs_on_target	frac_pairs_on_target	`seqtool-frac_pairs_on_target`
\|\|	frac_pairs_off_target	frac_pairs_off_target	`seqtool-frac_pairs_off_target`
\|\|	frac_proper_pairs	frac_proper_pairs	`seqtool-frac_proper_pairs`
\|\|	frac_bases_gt30x	frac_bases_gt30x	`seqtool-frac_bases_gt30x`
\|\|	frac_bases_gt100x	frac_bases_gt100x	`seqtool-frac_bases_gt100x`
\|\|	frag_size_q20	frag_size_q20	`seqtool-frag_size_q20`
\|\|	frag_size_median	frag_size_median	`seqtool-frag_size_median`
\|\|	frag_size_q80	frag_size_q80	`seqtool-frag_size_q80`
\|\|	frag_size_mean	frag_size_mean	`seqtool-frag_size_mean`
\|\|	frag_size_std	frag_size_std	`seqtool-frag_size_std`
\|\|	n_q20	n_q20	`seqtool-n_q20`
\|\|	n_q25	n_q25	`seqtool-n_q25`
\|\|	n_q30	n_q30	`seqtool-n_q30`
\|\|	n_bases	n_bases	`seqtool-n_bases`
\|\|	min_depth	min_depth	`seqtool-min_depth`
\|\|	mean_depth	mean_depth	`seqtool-mean_depth`
\|\|	cv_depth	cv_depth	`seqtool-cv_depth`
\|\|	max_depth	max_depth	`seqtool-max_depth`
\|\|	q1_depth	q1_depth	`seqtool-q1_depth`
\|\|	q5_depth	q5_depth	`seqtool-q5_depth`
\|\|	q50_depth	q50_depth	`seqtool-q50_depth`
\|\|	q95_depth	q95_depth	`seqtool-q95_depth`
\|\|	q99_depth	q99_depth	`seqtool-q99_depth`
\|\|	lt100x	lt100x	`seqtool-lt100x`
\|\|	lt700x	lt700x	`seqtool-lt700x`
\|\|	n_bases_gt30x	n_bases_gt30x	`seqtool-n_bases_gt30x`
\|\|	n_bases_gt100x	n_bases_gt100x	`seqtool-n_bases_gt100x`
\|\|	gc_0.0	gc_0.0	`seqtool-gc_0_0`
\|\|	gc_0.05	gc_0.05	`seqtool-gc_0_05`
\|\|	gc_0.1	gc_0.1	`seqtool-gc_0_1`
\|\|	gc_0.15	gc_0.15	`seqtool-gc_0_15`
\|\|	gc_0.2	gc_0.2	`seqtool-gc_0_2`
\|\|	gc_0.25	gc_0.25	`seqtool-gc_0_25`
\|\|	gc_0.3	gc_0.3	`seqtool-gc_0_3`
\|\|	gc_0.35	gc_0.35	`seqtool-gc_0_35`
\|\|	gc_0.4	gc_0.4	`seqtool-gc_0_4`
\|\|	gc_0.45	gc_0.45	`seqtool-gc_0_45`
\|\|	gc_0.5	gc_0.5	`seqtool-gc_0_5`
\|\|	gc_0.55	gc_0.55	`seqtool-gc_0_55`
\|\|	gc_0.6	gc_0.6	`seqtool-gc_0_6`
\|\|	gc_0.65	gc_0.65	`seqtool-gc_0_65`
\|\|	gc_0.7	gc_0.7	`seqtool-gc_0_7`
\|\|	gc_0.75	gc_0.75	`seqtool-gc_0_75`
\|\|	gc_0.8	gc_0.8	`seqtool-gc_0_8`
\|\|	gc_0.85	gc_0.85	`seqtool-gc_0_85`
\|\|	gc_0.9	gc_0.9	`seqtool-gc_0_9`
\|\|	gc_0.95	gc_0.95	`seqtool-gc_0_95`
\|\|	gc_1.0	gc_1.0	`seqtool-gc_1_0`
\|\|	bed	bed	`seqtool-bed`
\|\|	saturation_at_1000000_reads	saturation_at_1000000_reads	`seqtool-saturation_at_1000000_reads`
\|\|	roi_size	roi_size	`seqtool-roi_size`
\|\|	contam	contam	`seqtool-contam`
\|\|	n_sites	n_sites	`seqtool-n_sites`
\|\|	loglik	loglik	`seqtool-loglik`
\|\|	lrt	lrt	`seqtool-lrt`
\|\|	bed_base_count	bed_base_count	`seqtool-bed_base_count`

Picard

Tools for manipulating high-throughput sequencing data.http://broadinstitute.github.io/picard

Hybrid-selection metrics

Parsed from Picard HsMetrics tool that takes a SAM/BAM file input and collects metrics that are specific for sequence datasets generated through hybrid-selection. Hybrid-selection (HS) is the most commonly used technique to capture exon-specific sequences for targeted sequencing experiments such as exome sequencing.

Showing ²⁹/₂₉ rows and ²⁴/₂₉ columns.

Sample Name	At dropout	Bait design efficiency	Bait territory	Fold 80 base penalty	Fold enrichment	Gc dropout	Het SNP q	Het SNP sensitivity	Near-bait bases	Off-bait bases	On-bait bases	On-target bases	Usable bases on-bait	Usable bases on-target	PF bases	PF bases aligned	PF reads	Selected bases	PF unique reads	PF unique bases aligned	PF unique reads aligned	Total reads	Max target coverage	Mean bait coverage	Mean target coverage	Median target coverage	On-bait vs selected	Target territory	Zero coverage targets
NTC-D0002235	0.1	0.8	42301960.0	1.2	46.8	2.7	19.0	1.0	27650.1Mb	10379.6Mb	60677.2Mb	31872.4Mb	61.4%	32.2%	98898.7Mb	98706.9Mb	699.7M	89.5%	699.7M	98706.9Mb	699.7M	699.7M	10809.0	1434.4	933.3	966.0	0.7	34149253.0	0.9%
T13-D0003273	0.6	0.8	42301960.0	1.3	47.7	1.8	19.0	1.0	43290.5Mb	13722.2Mb	96055.5Mb	52393.4Mb	62.7%	34.2%	153308.6Mb	153068.2Mb	1075.9M	91.0%	1075.9M	153068.2Mb	1075.9M	1075.9M	22348.0	2270.7	1534.2	1563.0	0.7	34149253.0	0.9%
T13-D0003573	5.5	0.8	42301960.0	1.4	50.5	0.3	19.0	1.0	62788.3Mb	19656.0Mb	163337.2Mb	83890.6Mb	66.4%	34.1%	246129.8Mb	245781.5Mb	1746.6M	92.0%	1746.6M	245781.5Mb	1746.6M	1746.6M	93145.0	3861.2	2456.6	2430.0	0.7	34149253.0	1.1%
T18-D0003095	1.8	0.8	42301960.0	1.2	45.6	0.6	19.0	1.0	31334.1Mb	11759.9Mb	64389.6Mb	34628.6Mb	59.8%	32.2%	107704.1Mb	107483.6Mb	758.6M	89.1%	758.6M	107483.6Mb	758.6M	758.6M	9781.0	1522.1	1014.0	1047.0	0.7	34149253.0	1.0%
T18-D0003137	1.1	0.8	42301960.0	1.2	45.8	1.3	20.0	1.0	28861.6Mb	9579.3Mb	58074.1Mb	32476.9Mb	60.1%	33.6%	96701.5Mb	96515.0Mb	686.4M	90.1%	686.4M	96515.0Mb	686.4M	686.4M	10555.0	1372.8	951.0	971.0	0.7	34149253.0	0.8%
T21-D0002837	0.2	0.8	42301960.0	1.2	45.3	2.6	20.0	1.0	37553.7Mb	12759.2Mb	74026.6Mb	41308.1Mb	59.4%	33.2%	124577.8Mb	124339.5Mb	878.2M	89.7%	878.2M	124339.5Mb	878.2M	878.2M	11449.0	1750.0	1209.6	1241.0	0.7	34149253.0	0.8%
T21-D0002994	0.9	0.8	42301960.0	1.2	48.1	1.0	19.0	1.0	33579.2Mb	11631.8Mb	77982.9Mb	40917.5Mb	63.2%	33.2%	123406.9Mb	123193.8Mb	875.3M	90.6%	875.3M	123193.8Mb	875.3M	875.3M	17179.0	1843.5	1198.2	1231.0	0.7	34149253.0	0.9%
T21-D0003169	0.1	0.8	42301960.0	1.2	43.9	2.7	20.0	1.0	46550.0Mb	18336.0Mb	88803.1Mb	48687.7Mb	57.7%	31.6%	154032.9Mb	153689.1Mb	1085.4M	88.1%	1085.4M	153689.1Mb	1085.4M	1085.4M	31930.0	2099.3	1425.7	1474.0	0.7	34149253.0	0.7%
filler-D0000114	0.1	0.8	42301960.0	1.2	45.6	3.4	19.0	1.0	27133.2Mb	10061.0Mb	55734.9Mb	29811.3Mb	59.8%	32.0%	93125.2Mb	92929.1Mb	656.7M	89.2%	656.7M	92929.1Mb	656.7M	656.7M	8792.0	1317.5	873.0	902.0	0.7	34149253.0	0.9%
filler-D0000192	1.1	0.8	42301960.0	1.2	48.0	1.0	19.0	1.0	36950.2Mb	12981.1Mb	85402.6Mb	44577.2Mb	63.0%	32.9%	135563.8Mb	135333.9Mb	957.9M	90.4%	957.9M	135333.9Mb	957.9M	957.9M	15912.0	2018.9	1305.4	1341.0	0.7	34149253.0	1.0%
filler-D0000329	0.1	0.8	42301960.0	1.3	47.1	3.9	20.0	1.0	29363.5Mb	10231.6Mb	64254.1Mb	34346.0Mb	61.8%	33.0%	104034.5Mb	103849.2Mb	733.9M	90.1%	733.9M	103849.2Mb	733.9M	733.9M	9280.0	1518.9	1005.8	1035.0	0.7	34149253.0	0.8%
filler-D0000548	0.1	0.8	42301960.0	1.3	44.8	4.2	20.0	1.0	29074.3Mb	10234.1Mb	56401.9Mb	31420.2Mb	58.8%	32.8%	95905.5Mb	95710.3Mb	675.5M	89.3%	675.5M	95710.3Mb	675.5M	675.5M	9404.0	1333.3	920.1	945.0	0.7	34149253.0	0.7%
filler-D0000555	0.1	0.8	42301960.0	1.3	46.1	3.7	20.0	1.0	22777.5Mb	7929.2Mb	47287.4Mb	25756.2Mb	60.5%	33.0%	78143.6Mb	77994.1Mb	551.4M	89.8%	551.4M	77994.1Mb	551.4M	551.4M	7975.0	1117.9	754.2	773.0	0.7	34149253.0	0.9%
filler-D0000644	0.2	0.8	42301960.0	1.2	45.7	2.4	19.0	1.0	27146.6Mb	10014.1Mb	55846.8Mb	30132.4Mb	59.9%	32.3%	93195.1Mb	93007.5Mb	658.2M	89.2%	658.2M	93007.5Mb	658.2M	658.2M	9969.0	1320.2	882.4	911.0	0.7	34149253.0	1.0%
filler-D0000668	0.1	0.8	42301960.0	1.2	45.2	2.8	20.0	1.0	21918.2Mb	8101.8Mb	44025.6Mb	23934.3Mb	59.3%	32.3%	74204.3Mb	74045.6Mb	528.1M	89.1%	528.1M	74045.6Mb	528.1M	528.1M	9249.0	1040.7	700.9	721.0	0.7	34149253.0	0.9%
filler-D0000674	0.1	0.8	42301960.0	1.3	45.6	3.3	20.0	1.0	28989.3Mb	9571.8Mb	57588.7Mb	32148.3Mb	59.8%	33.4%	96333.0Mb	96149.8Mb	679.4M	90.0%	679.4M	96149.8Mb	679.4M	679.4M	23425.0	1361.4	941.4	964.0	0.7	34149253.0	0.7%
filler-D0000822	0.4	0.8	42301960.0	1.3	47.8	2.1	19.0	1.0	40589.6Mb	13559.4Mb	91840.0Mb	49149.2Mb	62.8%	33.6%	146221.8Mb	145989.1Mb	1030.4M	90.7%	1030.4M	145989.1Mb	1030.4M	1030.4M	19135.0	2171.1	1439.2	1472.0	0.7	34149253.0	1.0%
filler-D0001021	0.1	0.8	42301960.0	1.2	46.4	2.5	20.0	1.0	30817.1Mb	10518.2Mb	64831.4Mb	35190.0Mb	61.0%	33.1%	106357.6Mb	106166.6Mb	749.5M	90.1%	749.5M	106166.6Mb	749.5M	749.5M	10981.0	1532.6	1030.5	1063.0	0.7	34149253.0	0.8%
filler-D0001310	0.7	0.8	42301960.0	1.2	47.6	1.4	20.0	1.0	43216.9Mb	14126.8Mb	95758.6Mb	51859.8Mb	62.4%	33.8%	153364.9Mb	153102.3Mb	1079.5M	90.8%	1079.5M	153102.3Mb	1079.5M	1079.5M	20902.0	2263.7	1518.6	1556.0	0.7	34149253.0	0.8%
filler-D0001324	0.1	0.8	42301960.0	1.2	46.1	2.5	19.0	1.0	29896.3Mb	10733.0Mb	62393.2Mb	33731.0Mb	60.4%	32.7%	103221.2Mb	103022.4Mb	728.1M	89.6%	728.1M	103022.4Mb	728.1M	728.1M	9826.0	1474.9	987.8	1018.0	0.7	34149253.0	0.9%
filler-D0001376	0.3	0.8	42301960.0	1.2	46.9	1.7	19.0	1.0	20023.1Mb	7319.8Mb	43884.4Mb	23183.7Mb	61.5%	32.5%	71365.9Mb	71227.3Mb	507.9M	89.7%	507.9M	71227.3Mb	507.9M	507.9M	9354.0	1037.4	678.9	700.0	0.7	34149253.0	0.9%
filler-D0001776	0.1	0.8	42301960.0	1.2	44.3	3.2	20.0	1.0	21379.9Mb	8462.7Mb	41518.5Mb	22560.8Mb	58.0%	31.5%	71526.4Mb	71361.1Mb	506.3M	88.1%	506.3M	71361.1Mb	506.3M	506.3M	6389.0	981.5	660.7	682.0	0.7	34149253.0	0.8%
filler-D0002199	1.4	0.8	42301960.0	1.2	48.2	1.1	19.0	1.0	41840.8Mb	14170.1Mb	96779.8Mb	51091.7Mb	63.2%	33.4%	153045.7Mb	152790.7Mb	1083.4M	90.7%	1083.4M	152790.7Mb	1083.4M	1083.4M	16249.0	2287.8	1496.1	1531.0	0.7	34149253.0	0.9%
filler-D0002285	0.1	0.8	42301960.0	1.2	45.1	3.3	20.0	1.0	20249.0Mb	7067.7Mb	39862.7Mb	22077.3Mb	59.2%	32.8%	67313.9Mb	67179.4Mb	475.4M	89.5%	475.4M	67179.4Mb	475.4M	475.4M	5011.0	942.3	646.5	665.0	0.7	34149253.0	0.8%
filler-D0002463	0.1	0.8	42301960.0	1.2	47.6	2.6	19.0	1.0	34666.4Mb	12409.0Mb	78859.7Mb	41216.2Mb	62.5%	32.7%	126152.8Mb	125935.1Mb	891.6M	90.1%	891.6M	125935.1Mb	891.6M	891.6M	17982.0	1864.2	1206.9	1243.0	0.7	34149253.0	1.0%
filler-D0002606	0.1	0.8	42301960.0	1.2	46.6	3.4	20.0	1.0	32550.8Mb	11248.1Mb	69159.8Mb	37330.1Mb	61.1%	33.0%	113178.1Mb	112958.7Mb	797.8M	90.0%	797.8M	112958.7Mb	797.8M	797.8M	12564.0	1634.9	1093.1	1128.0	0.7	34149253.0	0.8%
filler-D0002607	0.1	0.8	42301960.0	1.2	45.4	2.6	20.0	1.0	27558.6Mb	9616.2Mb	55031.2Mb	30390.3Mb	59.6%	32.9%	92393.0Mb	92206.0Mb	654.6M	89.6%	654.6M	92206.0Mb	654.6M	654.6M	10836.0	1300.9	889.9	917.0	0.7	34149253.0	0.9%
filler-D0002686	0.1	0.8	42301960.0	1.2	46.9	3.5	19.0	1.0	25454.1Mb	9360.4Mb	55851.2Mb	29432.4Mb	61.5%	32.4%	90839.2Mb	90665.7Mb	643.7M	89.7%	643.7M	90665.7Mb	643.7M	643.7M	9874.0	1320.3	861.9	889.0	0.7	34149253.0	1.0%
filler-D0002735	0.3	0.8	42301960.0	1.3	46.4	2.1	20.0	1.0	59855.5Mb	18548.1Mb	122454.1Mb	69435.1Mb	60.9%	34.5%	201180.8Mb	200857.6Mb	1407.9M	90.8%	1407.9M	200857.6Mb	1407.9M	1407.9M	22397.0	2894.8	2033.3	2076.0	0.7	34149253.0	0.8%

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: picard_hsmetrics_table_table

Sort	Column	Description	ID	Scale
\|\|	At dropout	A measure of how undercovered <= 50% GC regions are relative to the mean.	`hsmetrics-AT_DROPOUT`
\|\|	Bait design efficiency	Target territory / bait territory. 1 == perfectly efficient, 0.5 = half of baited bases are not target.	`hsmetrics-BAIT_DESIGN_EFFICIENCY`
\|\|	Bait territory	The number of bases which have one or more baits on top of them.	`hsmetrics-BAIT_TERRITORY`
\|\|	Fold 80 base penalty	The fold over-coverage necessary to raise 80% of bases in "non-zero-cvg" targets to the mean coverage level in those targets.	`hsmetrics-FOLD_80_BASE_PENALTY`
\|\|	Fold enrichment	The fold by which the baited region has been amplified above genomic background.	`hsmetrics-FOLD_ENRICHMENT`
\|\|	Gc dropout	A measure of how undercovered >= 50% GC regions are relative to the mean.	`hsmetrics-GC_DROPOUT`
\|\|	Het SNP q	The Phred Scaled Q Score of the theoretical HET SNP sensitivity.	`hsmetrics-HET_SNP_Q`
\|\|	Het SNP sensitivity	The theoretical HET SNP sensitivity.	`hsmetrics-HET_SNP_SENSITIVITY`
\|\|	Near-bait bases	The number of PF aligned bases that mapped to within a fixed interval of a baited region, but not on a baited region.	`hsmetrics-NEAR_BAIT_BASES`	base_count
\|\|	Off-bait bases	The number of PF aligned bases that mapped to neither on or near a bait.	`hsmetrics-OFF_BAIT_BASES`	base_count
\|\|	On-bait bases	The number of PF aligned bases that mapped to a baited region of the genome.	`hsmetrics-ON_BAIT_BASES`	base_count
\|\|	On-target bases	The number of PF aligned bases that mapped to a targeted region of the genome.	`hsmetrics-ON_TARGET_BASES`	base_count
\|\|	Usable bases on-bait	The number of aligned, de-duped, on-bait bases out of the PF bases available.	`hsmetrics-PCT_USABLE_BASES_ON_BAIT`
\|\|	Usable bases on-target	The number of aligned, de-duped, on-target bases out of the PF bases available.	`hsmetrics-PCT_USABLE_BASES_ON_TARGET`
\|\|	PF bases	The number of bases in the PF reads.	`hsmetrics-PF_BASES`	base_count
\|\|	PF bases aligned	The number of PF unique bases that are aligned with mapping score > 0 to the reference genome.	`hsmetrics-PF_BASES_ALIGNED`	base_count
\|\|	PF reads	The number of reads that pass the vendor's filter.	`hsmetrics-PF_READS`	read_count
\|\|	Selected bases	On+Near Bait Bases / PF Bases Aligned.	`hsmetrics-PCT_SELECTED_BASES`
\|\|	PF unique reads	The number of PF reads that are not marked as duplicates.	`hsmetrics-PF_UNIQUE_READS`	read_count
\|\|	PF unique bases aligned	The number of bases in the PF aligned reads that are mapped to a reference base. Accounts for clipping and gaps.	`hsmetrics-PF_UQ_BASES_ALIGNED`	base_count
\|\|	PF unique reads aligned	The number of PF unique reads that are aligned with mapping score > 0 to the reference genome.	`hsmetrics-PF_UQ_READS_ALIGNED`	read_count
\|\|	Total reads	The total number of reads in the SAM or BAM file examine.	`hsmetrics-TOTAL_READS`	read_count
\|\|	Max target coverage	The maximum coverage of reads that mapped to target regions of an experiment.	`hsmetrics-MAX_TARGET_COVERAGE`
\|\|	Mean bait coverage	The mean coverage of all baits in the experiment.	`hsmetrics-MEAN_BAIT_COVERAGE`
\|\|	Mean target coverage	The mean coverage of targets.	`hsmetrics-MEAN_TARGET_COVERAGE`
\|\|	Median target coverage	The median coverage of targets.	`hsmetrics-MEDIAN_TARGET_COVERAGE`
\|\|	On-bait vs selected	The percentage of on+near bait bases that are on as opposed to near.	`hsmetrics-ON_BAIT_VS_SELECTED`
\|\|	Target territory	The unique number of target bases in the experiment where target is usually exons etc.	`hsmetrics-TARGET_TERRITORY`
\|\|	Zero coverage targets	The fraction of targets that did not reach coverage=1 over any base.	`hsmetrics-ZERO_CVG_TARGETS_PCT`

Hybrid-selection target coverage

The percentage of all target bases with at least x fold coverage.

Created with MultiQC

Insert Size

Plot shows the number of reads at a given insert size. Reads with different orientations are summed.

Created with MultiQC

Samtools

Version:


                      
                        1.21

HTSlib:


                      
                        1.23

Toolkit for interacting with BAM/CRAM files.http://www.htslib.orgDOI: 10.1093/bioinformatics/btp352

Percent mapped

Alignment metrics from samtools stats; mapped vs. unmapped reads vs. reads mapped with MQ0.

For a set of samples that have come from the same multiplexed library, similar numbers of reads for each sample are expected. Large differences in numbers might indicate issues during the library preparation process. Whilst large differences in read numbers may be controlled for in downstream processings (e.g. read count normalisation), you may wish to consider whether the read depths achieved have fallen below recommended levels depending on the applications.

Low alignment rates could indicate contamination of samples (e.g. adapter sequences), low sequencing quality or other artefacts. These can be further investigated in the sequence level QC (e.g. from FastQC).

Reads mapped with MQ0 often indicate that the reads are ambiguously mapped to multiple locations in the reference sequence. This can be due to repetitive regions in the genome, the presence of alternative contigs in the reference, or due to reads that are too short to be uniquely mapped. These reads are often filtered out in downstream analyses.

Created with MultiQC

Alignment stats

This module parses the output from samtools stats. All numbers in millions.

Created with MultiQC

Showing ²⁹/₂₉ rows and ¹³/₁₃ columns.

Sample Name	Total sequences	Mapped & paired	Properly paired	Duplicated	QC Failed	Reads MQ0	Mapped bases (CIGAR)	Bases Trimmed	Duplicated bases	Diff chromosomes	Other orientation	Inward pairs	Outward pairs
NTC-D0002235	699.7M	699.7M	596.6M	0.0M	0.0M	42.8M	98724.4Mb	0.0Mb	0.0Mb	1.7M	1.4M	328.7M	18.0M
T13-D0003273	1075.9M	1075.9M	1011.4M	0.0M	0.0M	54.6M	153088.8Mb	0.0Mb	0.0Mb	2.7M	0.8M	517.4M	17.1M
T13-D0003573	1746.6M	1746.6M	1466.9M	0.0M	0.0M	98.5M	245813.5Mb	0.0Mb	0.0Mb	3.1M	2.8M	812.1M	55.2M
T18-D0003095	758.6M	758.6M	684.2M	0.0M	0.0M	46.7M	107501.1Mb	0.0Mb	0.0Mb	2.3M	1.1M	358.6M	17.3M
T18-D0003137	686.4M	686.4M	674.0M	0.0M	0.0M	35.7M	96529.2Mb	0.0Mb	0.0Mb	2.3M	0.3M	322.9M	17.8M
T21-D0002837	878.2M	878.2M	860.8M	0.0M	0.0M	47.2M	124358.0Mb	0.0Mb	0.0Mb	3.3M	0.4M	417.4M	18.0M
T21-D0002994	875.3M	875.3M	763.1M	0.0M	0.0M	51.2M	123211.2Mb	0.0Mb	0.0Mb	2.2M	1.4M	407.2M	26.9M
T21-D0003169	1085.4M	1085.4M	1045.4M	0.0M	0.0M	68.7M	153718.1Mb	0.0Mb	0.0Mb	4.1M	0.8M	516.2M	21.6M
filler-D0000114	656.7M	656.7M	603.9M	0.0M	0.0M	38.4M	92944.8Mb	0.0Mb	0.0Mb	2.0M	0.8M	311.0M	14.5M
filler-D0000192	957.9M	957.9M	796.7M	0.0M	0.0M	56.9M	135353.0Mb	0.0Mb	0.0Mb	2.4M	1.9M	449.9M	24.7M
filler-D0000329	733.9M	733.9M	686.1M	0.0M	0.0M	39.3M	103864.9Mb	0.0Mb	0.0Mb	1.8M	0.7M	346.8M	17.7M
filler-D0000548	675.5M	675.5M	662.4M	0.0M	0.0M	37.0M	95725.6Mb	0.0Mb	0.0Mb	2.8M	0.3M	321.4M	13.3M
filler-D0000555	551.4M	551.4M	527.6M	0.0M	0.0M	29.1M	78005.9Mb	0.0Mb	0.0Mb	1.8M	0.4M	261.1M	12.4M
filler-D0000644	658.2M	658.2M	598.1M	0.0M	0.0M	38.8M	93022.5Mb	0.0Mb	0.0Mb	1.9M	0.9M	312.5M	13.8M
filler-D0000668	528.1M	528.1M	502.7M	0.0M	0.0M	29.8M	74057.9Mb	0.0Mb	0.0Mb	2.2M	0.4M	245.1M	16.4M
filler-D0000674	679.4M	679.4M	670.5M	0.0M	0.0M	36.0M	96164.4Mb	0.0Mb	0.0Mb	2.0M	0.2M	323.9M	13.5M
filler-D0000822	1030.4M	1030.4M	926.9M	0.0M	0.0M	56.2M	146008.8Mb	0.0Mb	0.0Mb	2.8M	1.3M	488.4M	22.7M
filler-D0001021	749.5M	749.5M	708.7M	0.0M	0.0M	39.9M	106183.1Mb	0.0Mb	0.0Mb	1.8M	0.5M	356.4M	15.9M
filler-D0001310	1079.5M	1079.5M	1014.1M	0.0M	0.0M	59.7M	153123.7Mb	0.0Mb	0.0Mb	2.7M	0.8M	514.5M	21.7M
filler-D0001324	728.1M	728.1M	671.7M	0.0M	0.0M	41.6M	103038.6Mb	0.0Mb	0.0Mb	2.1M	0.8M	345.9M	15.2M
filler-D0001376	507.9M	507.9M	455.7M	0.0M	0.0M	30.3M	71238.7Mb	0.0Mb	0.0Mb	1.2M	0.7M	235.6M	16.5M
filler-D0001776	506.3M	506.3M	474.6M	0.0M	0.0M	31.4M	71373.6Mb	0.0Mb	0.0Mb	1.9M	0.5M	238.1M	12.6M
filler-D0002199	1083.4M	1083.4M	926.8M	0.0M	0.0M	61.0M	152812.0Mb	0.0Mb	0.0Mb	2.7M	1.9M	508.0M	29.2M
filler-D0002285	475.4M	475.4M	464.9M	0.0M	0.0M	25.5M	67190.0Mb	0.0Mb	0.0Mb	1.6M	0.2M	225.4M	10.5M
filler-D0002463	891.6M	891.6M	753.8M	0.0M	0.0M	50.6M	125953.5Mb	0.0Mb	0.0Mb	2.5M	1.7M	417.6M	24.0M
filler-D0002606	797.8M	797.8M	743.1M	0.0M	0.0M	43.3M	112976.3Mb	0.0Mb	0.0Mb	2.1M	0.7M	379.2M	16.8M
filler-D0002607	654.6M	654.6M	637.0M	0.0M	0.0M	36.1M	92220.4Mb	0.0Mb	0.0Mb	2.1M	0.3M	309.2M	15.6M
filler-D0002686	643.7M	643.7M	553.8M	0.0M	0.0M	38.3M	90679.8Mb	0.0Mb	0.0Mb	1.8M	1.2M	301.5M	17.4M
filler-D0002735	1407.9M	1407.9M	1393.7M	0.0M	0.0M	69.5M	200885.3Mb	0.0Mb	0.0Mb	3.7M	0.4M	684.0M	15.9M

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: samtools-stats-dp_table

Sort	Column	Description	ID	Scale
\|\|	Total sequences	Total sequences	`raw_total_sequences`	read_count
\|\|	Mapped & paired	Paired-end technology bit set + both mates mapped	`reads_mapped_and_paired`	read_count
\|\|	Properly paired	Proper-pair bit set	`reads_properly_paired`	read_count
\|\|	Duplicated	PCR or optical duplicate bit set	`reads_duplicated`	read_count
\|\|	QC Failed	QC Failed	`reads_QC_failed`	read_count
\|\|	Reads MQ0	Reads mapped and MQ=0	`reads_MQ0`	read_count
\|\|	Mapped bases (CIGAR)	Mapped bases (CIGAR)	`bases_mapped__cigar`	base_count
\|\|	Bases Trimmed	Bases Trimmed	`bases_trimmed`	base_count
\|\|	Duplicated bases	Duplicated bases	`bases_duplicated`	base_count
\|\|	Diff chromosomes	Pairs on different chromosomes	`pairs_on_different_chromosomes`	read_count
\|\|	Other orientation	Pairs with other orientation	`pairs_with_other_orientation`	read_count
\|\|	Inward pairs	Inward oriented pairs	`inward_oriented_pairs`	read_count
\|\|	Outward pairs	Outward oriented pairs	`outward_oriented_pairs`	read_count

Sambamba

Version:


                      
                        1.0.1

Toolkit for interacting with BAM/CRAM files.https://lomereiter.github.io/sambambaDOI: 10.1093/bioinformatics/btv098

It is functionally similar to Samtools, but the source code is written in the D Language. It allows for faster performance while still being easy to use.

Sambamba Markdup

Number of reads, categorised by duplication state. Pair counts are doubled - see help text for details.

The table in the Picard metrics file contains some columns referring read pairs and some referring to single reads.

To make the numbers in this plot sum correctly, values referring to pairs are doubled according to the scheme below:

Total Sorted Paired End Reads = (Sorted End Pairs * 2) - Duplicate Reads
Total Single End Reads = Single Ends - (2 * Single Unmatched Pairs)
Total Single Unmatched Reads = 2 * Single Unmatched Pairs

Created with MultiQC

UMI-tools

Version:


                      
                        1.1.5

Tools for dealing with Unique Molecular Identifiers (UMIs)/(RMTs) and scRNA-Seq barcodes.https://github.com/CGATOxford/UMI-toolsDOI: 10.1101/gr.209601.116

UMI-tools was run in parallel by chromosome. Report represents only stats from chr1

Deduplicated Reads

Created with MultiQC

UMI Stats

Statistics from running umi_tools dedup or umi_tools extract

Positions Dedup: Total number of positions deduplicated
Total UMIs: Total UMIs found in sample
Unique UMIs: Unique UMIs found in sample
Mean #UMI: Mean number of unique UMIs per position
Max #UMI: Max number of unique UMIs per position

Created with MultiQC

Showing ²⁹/₂₉ rows and ⁵/₅ columns.

Sample Name	Positions Dedup	Total UMIs	Unique UMIs	Mean #UMI	Max #UMI
NTC-D0002235	33865992	92564582	105683	1.11	53
T13-D0003273	50635579	100929676	112298	1.13	84
T13-D0003573	78684597	151905391	129500	1.19	144
T18-D0003095	36530007	110107038	113213	1.12	57
T18-D0003137	34207632	76055439	105236	1.08	45
T21-D0002837	43216426	106090150	116031	1.10	84
T21-D0002994	42167035	96757359	113562	1.11	65
T21-D0003169	51523103	164640182	132335	1.13	76
filler-D0000114	31902528	92234453	107342	1.10	52
filler-D0000192	45606173	109331755	114206	1.13	78
filler-D0000329	35704648	83326599	102759	1.09	60
filler-D0000548	33197487	81258970	104063	1.09	60
filler-D0000555	27423104	61533207	96363	1.08	59
filler-D0000644	32074718	88747164	104443	1.10	68
filler-D0000668	26211834	67198830	95661	1.08	40
filler-D0000674	33485174	75759215	103008	1.09	125
filler-D0000822	48846859	101355647	113861	1.12	91
filler-D0001021	36329716	87111512	107167	1.10	62
filler-D0001310	50988531	108007827	119322	1.12	92
filler-D0001324	35117059	91107402	102931	1.10	60
filler-D0001376	25119544	62490986	94224	1.08	36
filler-D0001776	24989295	78785153	98226	1.09	64
filler-D0002199	51566014	115266270	118656	1.13	85
filler-D0002285	23676144	57454746	90052	1.07	43
filler-D0002463	42463879	103175344	111603	1.12	95
filler-D0002606	38575162	95129707	108220	1.10	63
filler-D0002607	32179162	82652674	107301	1.09	59
filler-D0002686	31319236	79859298	107039	1.10	63
filler-D0002735	65492823	136184295	125668	1.15	142

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: umitools_stats_violin_table

Sort	Column	Description	ID
\|\|	Positions Dedup	Total number of positions deduplicated	`positions_deduplicated`
\|\|	Total UMIs	Total UMIs found in sample	`total_umis`
\|\|	Unique UMIs	Unique UMIs found in sample	`unique_umis`
\|\|	Mean #UMI	Mean number of unique UMIs per position	`mean_umi_per_pos`
\|\|	Max #UMI	Max number of unique UMIs per position	`max_umi_per_pos`

fastp

Version:


                      
                        1.0.1

All-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).https://github.com/OpenGene/fastpDOI: 10.1093/bioinformatics/bty560

Fastp goes through fastq files in a folder and perform a series of quality control and filtering. Quality control and reporting are displayed both before and after filtering, allowing for a clear depiction of the consequences of the filtering process. Notably, the latter can be conducted on a variety of parameters including quality scores, length, as well as the presence of adapters, polyG, or polyX tailing.

Fastp was run on each flowcell lane independently. Only the last lane is represented in this section

Filtered Reads

Filtering statistics of sampled reads.

Created with MultiQC

Insert Sizes

Insert size estimation of sampled reads.

Created with MultiQC

Sequence Quality

Average sequencing quality over each base of all reads.

Created with MultiQC

GC Content

Average GC content over each base of all reads.

Created with MultiQC

N content

Average N content over each base of all reads.

Created with MultiQC

BCL Convert

Demultiplexes data and converts BCL files to FASTQ file formats for downstream analysis.https://support.illumina.com/sequencing/sequencing_software/bcl-convert.html

Warning: Detected multiple bclconvert files from the same sequencer run. Files were merged and undetermined stats were recalculated.

Sample Statistics

Statistics about each sample for each flowcell

Showing ³²/₃₂ rows and ⁹/₁₁ columns.

Sample Name	Clusters	Yield	Clusters/run	Yield/run	Bases ≥ Q30 (PF)	Bases ≥ Q30 (PF)	Perfect index	One mismatch index	Mean quality score	Index
LOW_FF-D0001384	2919.4M	875816.6Mb	9.9%	9.8%	833598.5Mb	95.2%	97.6%	2.4%	39.0	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L2	356.2M	106861.3Mb	1.2%	1.2%	101615.0Mb	95.1%	96.7%	3.3%	39.0	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L4	368.1M	110441.3Mb	1.2%	1.2%	104894.3Mb	95.0%	97.7%	2.3%	39.0	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L1	358.6M	107580.9Mb	1.2%	1.2%	102296.7Mb	95.1%	98.0%	2.0%	39.0	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L3	367.2M	110154.4Mb	1.2%	1.2%	104766.7Mb	95.1%	96.7%	3.3%	39.0	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L6	362.6M	108788.3Mb	1.2%	1.2%	103547.7Mb	95.2%	98.1%	1.9%	39.0	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L5	368.2M	110473.4Mb	1.2%	1.2%	105200.1Mb	95.2%	97.8%	2.2%	39.0	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L8	371.9M	111578.7Mb	1.3%	1.3%	106528.6Mb	95.5%	98.0%	2.0%	39.1	AGATTAGC-CGCCTTAT
↳ LOW_FF-D0001384 - L7	366.5M	109938.2Mb	1.2%	1.2%	104749.4Mb	95.3%	97.9%	2.1%	39.0	AGATTAGC-CGCCTTAT
NTC-D0002235	890.6M	267178.1Mb	3.0%	3.0%	254430.2Mb	95.2%	97.7%	2.3%	39.0	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L2	109.0M	32709.4Mb	0.4%	0.4%	31123.9Mb	95.2%	96.7%	3.3%	39.0	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L4	110.1M	33020.1Mb	0.4%	0.4%	31380.2Mb	95.0%	97.7%	2.3%	39.0	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L1	109.1M	32740.3Mb	0.4%	0.4%	31142.6Mb	95.1%	98.1%	1.9%	39.0	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L3	111.4M	33414.7Mb	0.4%	0.4%	31801.5Mb	95.2%	96.6%	3.4%	39.0	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L6	111.8M	33538.7Mb	0.4%	0.4%	31935.1Mb	95.2%	98.2%	1.8%	39.0	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L5	112.1M	33642.4Mb	0.4%	0.4%	32057.5Mb	95.3%	97.8%	2.2%	39.0	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L8	114.0M	34188.8Mb	0.4%	0.4%	32653.6Mb	95.5%	98.2%	1.8%	39.1	CAAGACTC-CACCGTCA
↳ NTC-D0002235 - L7	113.1M	33923.6Mb	0.4%	0.4%	32335.8Mb	95.3%	98.1%	1.9%	39.0	CAAGACTC-CACCGTCA
T13-D0003273	974.3M	292304.5Mb	3.3%	3.3%	278481.5Mb	95.3%	98.0%	2.0%	39.0	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L2	119.1M	35737.5Mb	0.4%	0.4%	34015.7Mb	95.2%	97.0%	3.0%	39.0	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L4	120.8M	36244.7Mb	0.4%	0.4%	34462.0Mb	95.1%	98.0%	2.0%	39.0	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L1	119.7M	35915.3Mb	0.4%	0.4%	34181.4Mb	95.2%	98.4%	1.6%	39.0	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L3	121.7M	36524.9Mb	0.4%	0.4%	34776.4Mb	95.2%	96.8%	3.2%	39.0	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L6	121.8M	36550.3Mb	0.4%	0.4%	34822.3Mb	95.3%	98.5%	1.5%	39.0	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L5	122.4M	36719.1Mb	0.4%	0.4%	35002.0Mb	95.3%	98.1%	1.9%	39.1	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L8	125.1M	37526.6Mb	0.4%	0.4%	35855.7Mb	95.5%	98.4%	1.6%	39.1	ATGTTGCC-TAGAAGCC
↳ T13-D0003273 - L7	123.6M	37086.1Mb	0.4%	0.4%	35365.9Mb	95.4%	98.3%	1.7%	39.1	ATGTTGCC-TAGAAGCC
T13-D0003573	1447.9M	434361.7Mb	4.9%	4.9%	414378.8Mb	95.4%	97.9%	2.1%	39.1	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L2	177.6M	53279.0Mb	0.6%	0.6%	50788.9Mb	95.3%	96.9%	3.1%	39.0	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L4	180.0M	53994.1Mb	0.6%	0.6%	51407.5Mb	95.2%	98.0%	2.0%	39.0	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L1	178.7M	53603.8Mb	0.6%	0.6%	51063.3Mb	95.3%	98.3%	1.7%	39.0	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L3	180.8M	54242.6Mb	0.6%	0.6%	51711.4Mb	95.3%	96.9%	3.1%	39.0	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L6	181.9M	54574.3Mb	0.6%	0.6%	52064.6Mb	95.4%	98.4%	1.6%	39.1	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L5	182.1M	54624.4Mb	0.6%	0.6%	52153.5Mb	95.5%	98.0%	2.0%	39.1	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L8	183.8M	55144.4Mb	0.6%	0.6%	52763.0Mb	95.7%	98.4%	1.6%	39.1	CGACCTTA-GCTCTTAG
↳ T13-D0003573 - L7	183.0M	54899.2Mb	0.6%	0.6%	52426.6Mb	95.5%	98.3%	1.7%	39.1	CGACCTTA-GCTCTTAG
T18-D0003095	1060.8M	318233.5Mb	3.6%	3.6%	303083.0Mb	95.2%	98.2%	1.8%	39.0	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L2	129.5M	38859.9Mb	0.4%	0.4%	36977.4Mb	95.2%	97.2%	2.8%	39.0	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L4	132.4M	39714.2Mb	0.4%	0.4%	37750.1Mb	95.1%	98.3%	1.7%	39.0	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L1	129.8M	38954.7Mb	0.4%	0.4%	37060.2Mb	95.1%	98.6%	1.4%	39.0	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L3	133.3M	40000.6Mb	0.5%	0.4%	38077.0Mb	95.2%	97.1%	2.9%	39.0	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L6	132.3M	39690.3Mb	0.4%	0.4%	37799.9Mb	95.2%	98.7%	1.3%	39.0	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L5	133.7M	40109.8Mb	0.5%	0.5%	38224.1Mb	95.3%	98.3%	1.7%	39.0	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L8	135.6M	40678.3Mb	0.5%	0.5%	38848.9Mb	95.5%	98.6%	1.4%	39.1	CAGCAGGT-CACTTAGG
↳ T18-D0003095 - L7	134.1M	40225.8Mb	0.5%	0.5%	38345.4Mb	95.3%	98.5%	1.5%	39.1	CAGCAGGT-CACTTAGG
T18-D0003137	729.7M	218917.8Mb	2.5%	2.5%	207710.2Mb	94.9%	97.9%	2.1%	39.0	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L2	89.5M	26839.6Mb	0.3%	0.3%	25438.1Mb	94.8%	96.9%	3.1%	38.9	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L4	90.4M	27111.8Mb	0.3%	0.3%	25669.9Mb	94.7%	98.0%	2.0%	38.9	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L1	89.6M	26870.6Mb	0.3%	0.3%	25473.9Mb	94.8%	98.4%	1.6%	38.9	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L3	91.3M	27387.0Mb	0.3%	0.3%	25969.0Mb	94.8%	96.8%	3.2%	38.9	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L6	90.4M	27125.2Mb	0.3%	0.3%	25737.9Mb	94.9%	98.4%	1.6%	39.0	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L5	91.6M	27466.8Mb	0.3%	0.3%	26074.6Mb	94.9%	98.0%	2.0%	39.0	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L8	94.8M	28449.9Mb	0.3%	0.3%	27072.3Mb	95.2%	98.3%	1.7%	39.0	TCTAGCTG-ATAGGTAA
↳ T18-D0003137 - L7	92.2M	27667.0Mb	0.3%	0.3%	26274.6Mb	95.0%	98.2%	1.8%	39.0	TCTAGCTG-ATAGGTAA
T21-D0002837	1014.2M	304273.2Mb	3.4%	3.4%	288800.4Mb	94.9%	98.2%	1.8%	39.0	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L2	124.2M	37271.0Mb	0.4%	0.4%	35337.7Mb	94.8%	97.3%	2.7%	38.9	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L4	125.7M	37702.6Mb	0.4%	0.4%	35710.0Mb	94.7%	98.3%	1.7%	38.9	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L1	124.4M	37315.3Mb	0.4%	0.4%	35385.6Mb	94.8%	98.7%	1.3%	38.9	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L3	126.6M	37976.4Mb	0.4%	0.4%	36021.7Mb	94.9%	97.1%	2.9%	38.9	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L6	126.8M	38046.9Mb	0.4%	0.4%	36113.7Mb	94.9%	98.7%	1.3%	39.0	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L5	127.5M	38243.0Mb	0.4%	0.4%	36318.7Mb	95.0%	98.3%	1.7%	39.0	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L8	130.5M	39152.9Mb	0.4%	0.4%	37272.8Mb	95.2%	98.6%	1.4%	39.0	ATTCGGCT-TTAACGTC
↳ T21-D0002837 - L7	128.6M	38565.2Mb	0.4%	0.4%	36640.2Mb	95.0%	98.6%	1.4%	39.0	ATTCGGCT-TTAACGTC
T21-D0002994	929.7M	278904.5Mb	3.2%	3.1%	265954.3Mb	95.4%	96.1%	3.9%	39.1	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L2	113.5M	34052.6Mb	0.4%	0.4%	32444.4Mb	95.3%	95.1%	4.9%	39.0	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L4	115.9M	34766.0Mb	0.4%	0.4%	33091.2Mb	95.2%	96.0%	4.0%	39.0	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L1	114.1M	34243.7Mb	0.4%	0.4%	32610.8Mb	95.2%	96.4%	3.6%	39.0	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L3	116.7M	35003.3Mb	0.4%	0.4%	33360.0Mb	95.3%	95.1%	4.9%	39.0	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L6	116.1M	34824.8Mb	0.4%	0.4%	33208.2Mb	95.4%	96.5%	3.5%	39.1	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L5	117.0M	35090.2Mb	0.4%	0.4%	33487.0Mb	95.4%	96.1%	3.9%	39.1	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L8	118.8M	35652.3Mb	0.4%	0.4%	34089.5Mb	95.6%	96.8%	3.2%	39.1	ATAAGCGG-CTGTTCTA
↳ T21-D0002994 - L7	117.6M	35271.6Mb	0.4%	0.4%	33663.3Mb	95.4%	96.5%	3.5%	39.1	ATAAGCGG-CTGTTCTA
T21-D0003169	1593.3M	477982.5Mb	5.4%	5.4%	454191.5Mb	95.0%	97.9%	2.1%	39.0	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L2	195.1M	58531.1Mb	0.7%	0.7%	55561.7Mb	94.9%	96.9%	3.1%	38.9	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L4	197.6M	59283.6Mb	0.7%	0.7%	56213.4Mb	94.8%	98.0%	2.0%	38.9	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L1	195.0M	58493.2Mb	0.7%	0.7%	55531.9Mb	94.9%	98.3%	1.7%	39.0	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L3	199.4M	59833.5Mb	0.7%	0.7%	56815.7Mb	95.0%	96.9%	3.1%	39.0	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L6	199.6M	59881.7Mb	0.7%	0.7%	56905.2Mb	95.0%	98.3%	1.7%	39.0	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L5	201.2M	60353.9Mb	0.7%	0.7%	57381.4Mb	95.1%	98.0%	2.0%	39.0	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L8	203.6M	61065.9Mb	0.7%	0.7%	58196.6Mb	95.3%	98.3%	1.7%	39.0	TAACTTGG-GTCGTGAA
↳ T21-D0003169 - L7	201.8M	60539.7Mb	0.7%	0.7%	57585.6Mb	95.1%	98.2%	1.8%	39.0	TAACTTGG-GTCGTGAA
filler-D0000114	892.1M	267615.8Mb	3.0%	3.0%	254694.1Mb	95.2%	97.6%	2.4%	39.0	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L2	109.3M	32801.3Mb	0.4%	0.4%	31186.8Mb	95.1%	96.7%	3.3%	39.0	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L4	110.2M	33067.2Mb	0.4%	0.4%	31406.9Mb	95.0%	97.7%	2.3%	39.0	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L1	109.7M	32922.3Mb	0.4%	0.4%	31296.0Mb	95.1%	98.1%	1.9%	39.0	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L3	111.0M	33314.1Mb	0.4%	0.4%	31683.7Mb	95.1%	96.4%	3.6%	39.0	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L6	112.3M	33686.3Mb	0.4%	0.4%	32063.3Mb	95.2%	98.1%	1.9%	39.0	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L5	112.4M	33733.6Mb	0.4%	0.4%	32128.3Mb	95.2%	97.7%	2.3%	39.0	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L8	113.7M	34118.8Mb	0.4%	0.4%	32564.7Mb	95.4%	98.1%	1.9%	39.1	CTTACGAA-ACGGACTG
↳ filler-D0000114 - L7	113.2M	33972.2Mb	0.4%	0.4%	32364.4Mb	95.3%	98.0%	2.0%	39.0	CTTACGAA-ACGGACTG
filler-D0000192	1046.1M	313837.8Mb	3.5%	3.5%	299229.3Mb	95.3%	98.2%	1.8%	39.1	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L2	128.5M	38536.5Mb	0.4%	0.4%	36712.2Mb	95.3%	97.3%	2.7%	39.0	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L4	130.0M	38996.8Mb	0.4%	0.4%	37111.8Mb	95.2%	98.3%	1.7%	39.0	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L1	129.4M	38806.8Mb	0.4%	0.4%	36954.0Mb	95.2%	98.7%	1.3%	39.0	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L3	130.3M	39090.5Mb	0.4%	0.4%	37250.2Mb	95.3%	97.2%	2.8%	39.0	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L6	130.6M	39166.1Mb	0.4%	0.4%	37342.3Mb	95.3%	98.7%	1.3%	39.1	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L5	131.5M	39444.4Mb	0.4%	0.4%	37634.4Mb	95.4%	98.3%	1.7%	39.1	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L8	134.1M	40224.6Mb	0.5%	0.5%	38459.7Mb	95.6%	98.6%	1.4%	39.1	CGCGGTAT-ATTACCGA
↳ filler-D0000192 - L7	131.9M	39572.1Mb	0.4%	0.4%	37764.5Mb	95.4%	98.6%	1.4%	39.1	CGCGGTAT-ATTACCGA
filler-D0000329	802.7M	240805.4Mb	2.7%	2.7%	229462.8Mb	95.3%	97.9%	2.1%	39.0	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L2	98.1M	29425.8Mb	0.3%	0.3%	28015.1Mb	95.2%	96.9%	3.1%	39.0	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L4	101.1M	30333.3Mb	0.3%	0.3%	28846.9Mb	95.1%	98.0%	2.0%	39.0	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L1	98.9M	29655.6Mb	0.3%	0.3%	28229.4Mb	95.2%	98.3%	1.7%	39.0	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L3	100.8M	30229.5Mb	0.3%	0.3%	28786.3Mb	95.2%	96.8%	3.2%	39.0	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L6	99.6M	29887.8Mb	0.3%	0.3%	28478.4Mb	95.3%	98.3%	1.7%	39.0	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L5	100.8M	30246.7Mb	0.3%	0.3%	28837.6Mb	95.3%	98.0%	2.0%	39.1	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L8	102.5M	30742.8Mb	0.3%	0.3%	29382.2Mb	95.6%	98.3%	1.7%	39.1	TATCCGCG-GTTGCATC
↳ filler-D0000329 - L7	100.9M	30283.8Mb	0.3%	0.3%	28886.9Mb	95.4%	98.2%	1.8%	39.1	TATCCGCG-GTTGCATC
filler-D0000548	788.5M	236558.8Mb	2.7%	2.7%	224462.9Mb	94.9%	97.6%	2.4%	39.0	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L2	96.7M	29024.3Mb	0.3%	0.3%	27510.2Mb	94.8%	96.8%	3.2%	38.9	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L4	97.2M	29155.3Mb	0.3%	0.3%	27605.3Mb	94.7%	97.7%	2.3%	38.9	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L1	96.4M	28922.3Mb	0.3%	0.3%	27420.7Mb	94.8%	98.1%	1.9%	38.9	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L3	98.6M	29570.5Mb	0.3%	0.3%	28039.4Mb	94.8%	96.6%	3.4%	38.9	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L6	98.5M	29536.6Mb	0.3%	0.3%	28030.3Mb	94.9%	98.1%	1.9%	39.0	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L5	99.3M	29788.5Mb	0.3%	0.3%	28279.9Mb	94.9%	97.6%	2.4%	39.0	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L8	101.8M	30538.0Mb	0.3%	0.3%	29061.3Mb	95.2%	98.1%	1.9%	39.0	TCTCACCA-TTAACAGG
↳ filler-D0000548 - L7	100.1M	30023.3Mb	0.3%	0.3%	28515.8Mb	95.0%	98.0%	2.0%	39.0	TCTCACCA-TTAACAGG
filler-D0000555	591.9M	177561.3Mb	2.0%	2.0%	168802.5Mb	95.1%	97.9%	2.1%	39.0	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L2	72.9M	21855.6Mb	0.2%	0.2%	20754.0Mb	95.0%	97.0%	3.0%	39.0	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L4	72.8M	21846.4Mb	0.2%	0.2%	20727.3Mb	94.9%	98.0%	2.0%	39.0	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L1	73.0M	21892.5Mb	0.2%	0.2%	20793.9Mb	95.0%	98.4%	1.6%	39.0	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L3	73.3M	21993.7Mb	0.2%	0.2%	20895.5Mb	95.0%	96.8%	3.2%	39.0	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L6	74.2M	22251.6Mb	0.3%	0.2%	21157.1Mb	95.1%	98.5%	1.5%	39.0	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L5	74.6M	22367.3Mb	0.3%	0.3%	21277.3Mb	95.1%	98.1%	1.9%	39.0	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L8	76.2M	22863.0Mb	0.3%	0.3%	21795.2Mb	95.3%	98.4%	1.6%	39.0	GCCAGCTA-TTGTTCGT
↳ filler-D0000555 - L7	75.0M	22491.2Mb	0.3%	0.3%	21402.2Mb	95.2%	98.3%	1.7%	39.0	GCCAGCTA-TTGTTCGT
filler-D0000644	852.4M	255724.0Mb	2.9%	2.9%	243398.1Mb	95.2%	97.9%	2.1%	39.0	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L2	104.6M	31388.5Mb	0.4%	0.4%	29846.4Mb	95.1%	97.0%	3.0%	39.0	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L4	105.4M	31608.9Mb	0.4%	0.4%	30024.5Mb	95.0%	97.9%	2.1%	39.0	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L1	105.0M	31497.5Mb	0.4%	0.4%	29945.1Mb	95.1%	98.4%	1.6%	39.0	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L3	106.2M	31863.8Mb	0.4%	0.4%	30307.2Mb	95.1%	96.8%	3.2%	39.0	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L6	106.7M	32020.9Mb	0.4%	0.4%	30479.2Mb	95.2%	98.4%	1.6%	39.0	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L5	107.1M	32120.8Mb	0.4%	0.4%	30593.2Mb	95.2%	98.0%	2.0%	39.0	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L8	109.4M	32820.7Mb	0.4%	0.4%	31331.1Mb	95.5%	98.4%	1.6%	39.1	TCGCGACA-CGAGTAAT
↳ filler-D0000644 - L7	108.0M	32403.0Mb	0.4%	0.4%	30871.4Mb	95.3%	98.3%	1.7%	39.0	TCGCGACA-CGAGTAAT
filler-D0000668	651.3M	195377.7Mb	2.2%	2.2%	185091.0Mb	94.7%	97.9%	2.1%	38.9	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L2	80.0M	24000.6Mb	0.3%	0.3%	22713.2Mb	94.6%	97.0%	3.0%	38.9	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L4	79.7M	23896.3Mb	0.3%	0.3%	22587.8Mb	94.5%	98.0%	2.0%	38.9	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L1	79.4M	23823.8Mb	0.3%	0.3%	22551.2Mb	94.7%	98.4%	1.6%	38.9	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L3	81.0M	24306.8Mb	0.3%	0.3%	23010.9Mb	94.7%	96.9%	3.1%	38.9	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L6	82.2M	24651.3Mb	0.3%	0.3%	23355.7Mb	94.7%	98.4%	1.6%	38.9	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L5	82.3M	24685.1Mb	0.3%	0.3%	23399.0Mb	94.8%	98.1%	1.9%	38.9	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L8	83.6M	25086.3Mb	0.3%	0.3%	23833.8Mb	95.0%	98.4%	1.6%	39.0	TCGAACAC-GCGAGGTT
↳ filler-D0000668 - L7	83.1M	24927.3Mb	0.3%	0.3%	23639.4Mb	94.8%	98.3%	1.7%	38.9	TCGAACAC-GCGAGGTT
filler-D0000674	730.5M	219136.3Mb	2.5%	2.5%	208200.0Mb	95.0%	98.0%	2.0%	39.0	AGGTAACA-GCACGATG
↳ filler-D0000674 - L2	89.9M	26963.6Mb	0.3%	0.3%	25592.3Mb	94.9%	97.1%	2.9%	38.9	AGGTAACA-GCACGATG
↳ filler-D0000674 - L4	89.6M	26891.7Mb	0.3%	0.3%	25495.2Mb	94.8%	98.1%	1.9%	38.9	AGGTAACA-GCACGATG
↳ filler-D0000674 - L1	89.3M	26801.5Mb	0.3%	0.3%	25438.1Mb	94.9%	98.5%	1.5%	39.0	AGGTAACA-GCACGATG
↳ filler-D0000674 - L3	91.0M	27294.6Mb	0.3%	0.3%	25914.5Mb	94.9%	97.0%	3.0%	39.0	AGGTAACA-GCACGATG
↳ filler-D0000674 - L6	91.8M	27525.2Mb	0.3%	0.3%	26154.0Mb	95.0%	98.5%	1.5%	39.0	AGGTAACA-GCACGATG
↳ filler-D0000674 - L5	92.2M	27661.3Mb	0.3%	0.3%	26298.0Mb	95.1%	98.1%	1.9%	39.0	AGGTAACA-GCACGATG
↳ filler-D0000674 - L8	93.8M	28153.9Mb	0.3%	0.3%	26828.0Mb	95.3%	98.5%	1.5%	39.0	AGGTAACA-GCACGATG
↳ filler-D0000674 - L7	92.8M	27844.5Mb	0.3%	0.3%	26480.0Mb	95.1%	98.4%	1.6%	39.0	AGGTAACA-GCACGATG
filler-D0000822	978.5M	293538.0Mb	3.3%	3.3%	279623.6Mb	95.3%	98.1%	1.9%	39.0	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L2	119.6M	35878.7Mb	0.4%	0.4%	34147.1Mb	95.2%	97.2%	2.8%	39.0	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L4	122.4M	36733.2Mb	0.4%	0.4%	34922.7Mb	95.1%	98.2%	1.8%	39.0	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L1	120.7M	36208.5Mb	0.4%	0.4%	34454.1Mb	95.2%	98.6%	1.4%	39.0	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L3	122.7M	36799.3Mb	0.4%	0.4%	35033.9Mb	95.2%	97.2%	2.8%	39.0	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L6	121.6M	36487.8Mb	0.4%	0.4%	34758.1Mb	95.3%	98.6%	1.4%	39.0	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L5	122.6M	36770.9Mb	0.4%	0.4%	35048.8Mb	95.3%	98.3%	1.7%	39.1	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L8	125.5M	37655.7Mb	0.4%	0.4%	35975.0Mb	95.5%	98.6%	1.4%	39.1	CGGACGAT-TAGGTGGT
↳ filler-D0000822 - L7	123.3M	37003.8Mb	0.4%	0.4%	35283.8Mb	95.4%	98.5%	1.5%	39.1	CGGACGAT-TAGGTGGT
filler-D0001021	841.2M	252360.4Mb	2.9%	2.8%	240030.8Mb	95.1%	97.5%	2.5%	39.0	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L2	103.0M	30894.6Mb	0.3%	0.3%	29358.6Mb	95.0%	96.5%	3.5%	39.0	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L4	104.2M	31256.2Mb	0.4%	0.4%	29665.2Mb	94.9%	97.6%	2.4%	39.0	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L1	102.8M	30854.7Mb	0.3%	0.3%	29321.7Mb	95.0%	98.0%	2.0%	39.0	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L3	105.4M	31624.6Mb	0.4%	0.4%	30059.3Mb	95.1%	96.5%	3.5%	39.0	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L6	105.0M	31502.1Mb	0.4%	0.4%	29961.1Mb	95.1%	98.0%	2.0%	39.0	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L5	106.0M	31809.8Mb	0.4%	0.4%	30269.9Mb	95.2%	97.7%	2.3%	39.0	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L8	108.0M	32410.4Mb	0.4%	0.4%	30920.0Mb	95.4%	98.0%	2.0%	39.1	TGGAGATC-CAGCGGTA
↳ filler-D0001021 - L7	106.7M	32008.1Mb	0.4%	0.4%	30475.0Mb	95.2%	97.9%	2.1%	39.0	TGGAGATC-CAGCGGTA
filler-D0001217	0.0M	0.2Mb	0.0%	0.0%	0.2Mb	94.8%	97.5%	2.5%	38.9	CGCACTTC-AATATGCC
↳ filler-D0001217 - L2	0.0M	0.0Mb	0.0%	0.0%	0.0Mb	95.8%	93.6%	6.4%	39.1	CGCACTTC-AATATGCC
↳ filler-D0001217 - L4	0.0M	0.0Mb	0.0%	0.0%	0.0Mb	95.4%	98.4%	1.6%	39.1	CGCACTTC-AATATGCC
↳ filler-D0001217 - L1	0.0M	0.0Mb	0.0%	0.0%	0.0Mb	96.7%	98.9%	1.1%	39.3	CGCACTTC-AATATGCC
↳ filler-D0001217 - L3	0.0M	0.0Mb	0.0%	0.0%	0.0Mb	95.4%	100.0%	0.0%	39.1	CGCACTTC-AATATGCC
↳ filler-D0001217 - L6	0.0M	0.0Mb	0.0%	0.0%	0.0Mb	93.5%	97.1%	2.9%	38.7	CGCACTTC-AATATGCC
↳ filler-D0001217 - L5	0.0M	0.0Mb	0.0%	0.0%	0.0Mb	93.8%	95.2%	4.8%	38.7	CGCACTTC-AATATGCC
↳ filler-D0001217 - L8	0.0M	0.0Mb	0.0%	0.0%	0.0Mb	93.5%	98.8%	1.2%	38.7	CGCACTTC-AATATGCC
↳ filler-D0001217 - L7	0.0M	0.0Mb	0.0%	0.0%	0.0Mb	94.6%	98.7%	1.3%	38.9	CGCACTTC-AATATGCC
filler-D0001310	1046.6M	313983.1Mb	3.5%	3.5%	299116.1Mb	95.3%	97.7%	2.3%	39.0	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L2	128.4M	38525.6Mb	0.4%	0.4%	36666.9Mb	95.2%	96.8%	3.2%	39.0	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L4	129.6M	38875.8Mb	0.4%	0.4%	36957.4Mb	95.1%	97.8%	2.2%	39.0	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L1	128.7M	38595.3Mb	0.4%	0.4%	36725.7Mb	95.2%	98.2%	1.8%	39.0	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L3	130.5M	39135.8Mb	0.4%	0.4%	37256.4Mb	95.2%	96.7%	3.3%	39.0	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L6	131.4M	39426.7Mb	0.4%	0.4%	37562.6Mb	95.3%	98.2%	1.8%	39.0	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L5	131.7M	39504.5Mb	0.4%	0.4%	37658.1Mb	95.3%	97.8%	2.2%	39.0	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L8	133.6M	40094.2Mb	0.5%	0.5%	38311.1Mb	95.6%	98.2%	1.8%	39.1	CCACAGCC-GCTATTGA
↳ filler-D0001310 - L7	132.8M	39825.2Mb	0.5%	0.4%	37977.8Mb	95.4%	98.1%	1.9%	39.1	CCACAGCC-GCTATTGA
filler-D0001324	884.2M	265259.8Mb	3.0%	3.0%	252559.5Mb	95.2%	98.2%	1.8%	39.0	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L2	108.8M	32634.6Mb	0.4%	0.4%	31043.6Mb	95.1%	97.3%	2.7%	39.0	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L4	108.9M	32660.9Mb	0.4%	0.4%	31031.8Mb	95.0%	98.3%	1.7%	39.0	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L1	108.5M	32546.0Mb	0.4%	0.4%	30951.5Mb	95.1%	98.7%	1.3%	39.0	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L3	109.8M	32940.4Mb	0.4%	0.4%	31341.8Mb	95.1%	97.2%	2.8%	39.0	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L6	111.6M	33468.2Mb	0.4%	0.4%	31868.6Mb	95.2%	98.7%	1.3%	39.0	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L5	111.4M	33424.0Mb	0.4%	0.4%	31844.6Mb	95.3%	98.3%	1.7%	39.0	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L8	113.0M	33896.6Mb	0.4%	0.4%	32368.8Mb	95.5%	98.7%	1.3%	39.1	TTACGCGC-CTTAACGA
↳ filler-D0001324 - L7	112.3M	33689.2Mb	0.4%	0.4%	32108.7Mb	95.3%	98.6%	1.4%	39.0	TTACGCGC-CTTAACGA
filler-D0001376	602.4M	180722.1Mb	2.0%	2.0%	171964.2Mb	95.2%	97.7%	2.3%	39.0	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L2	73.8M	22132.3Mb	0.3%	0.2%	21041.3Mb	95.1%	96.8%	3.2%	39.0	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L4	75.2M	22564.1Mb	0.3%	0.3%	21426.7Mb	95.0%	97.8%	2.2%	39.0	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L1	74.0M	22190.9Mb	0.3%	0.2%	21092.5Mb	95.1%	98.1%	1.9%	39.0	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L3	75.5M	22650.7Mb	0.3%	0.3%	21537.7Mb	95.1%	96.7%	3.3%	39.0	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L6	74.9M	22475.1Mb	0.3%	0.3%	21384.9Mb	95.1%	98.2%	1.8%	39.0	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L5	75.7M	22724.2Mb	0.3%	0.3%	21636.0Mb	95.2%	97.8%	2.2%	39.0	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L8	77.3M	23188.0Mb	0.3%	0.3%	22131.1Mb	95.4%	98.2%	1.8%	39.1	TCCAACTG-TGTCCGTA
↳ filler-D0001376 - L7	76.0M	22796.7Mb	0.3%	0.3%	21713.8Mb	95.2%	98.1%	1.9%	39.0	TCCAACTG-TGTCCGTA
filler-D0001664	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L2	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L4	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L1	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L3	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L6	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L5	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L8	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
↳ filler-D0001664 - L7	0.0M	0.0Mb	0.0%		0.0Mb					GAACCGCA-CATTATGC
filler-D0001776	760.3M	228096.0Mb	2.6%	2.6%	216763.5Mb	95.0%	98.1%	1.9%	39.0	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L2	93.4M	28033.5Mb	0.3%	0.3%	26613.4Mb	94.9%	97.2%	2.8%	38.9	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L4	93.8M	28150.3Mb	0.3%	0.3%	26696.3Mb	94.8%	98.1%	1.9%	38.9	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L1	93.5M	28039.9Mb	0.3%	0.3%	26619.3Mb	94.9%	98.5%	1.5%	39.0	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L3	94.6M	28368.2Mb	0.3%	0.3%	26939.5Mb	95.0%	97.1%	2.9%	39.0	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L6	95.4M	28609.0Mb	0.3%	0.3%	27191.9Mb	95.0%	98.6%	1.4%	39.0	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L5	95.6M	28670.0Mb	0.3%	0.3%	27265.3Mb	95.1%	98.2%	1.8%	39.0	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L8	97.7M	29308.4Mb	0.3%	0.3%	27931.4Mb	95.3%	98.5%	1.5%	39.0	ACAACAGG-TCCACTGT
↳ filler-D0001776 - L7	96.4M	28916.8Mb	0.3%	0.3%	27506.3Mb	95.1%	98.5%	1.5%	39.0	ACAACAGG-TCCACTGT
filler-D0002199	1100.7M	330198.4Mb	3.7%	3.7%	314647.6Mb	95.3%	97.7%	2.3%	39.0	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L2	135.0M	40497.9Mb	0.5%	0.5%	38559.0Mb	95.2%	96.7%	3.3%	39.0	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L4	136.3M	40892.4Mb	0.5%	0.5%	38889.8Mb	95.1%	97.7%	2.3%	39.0	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L1	135.5M	40661.6Mb	0.5%	0.5%	38698.4Mb	95.2%	98.1%	1.9%	39.0	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L3	137.2M	41166.2Mb	0.5%	0.5%	39203.2Mb	95.2%	96.7%	3.3%	39.0	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L6	138.5M	41544.3Mb	0.5%	0.5%	39588.1Mb	95.3%	98.2%	1.8%	39.0	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L5	138.5M	41560.1Mb	0.5%	0.5%	39631.9Mb	95.4%	97.8%	2.2%	39.1	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L8	140.0M	41995.3Mb	0.5%	0.5%	40130.3Mb	95.6%	98.2%	1.8%	39.1	CCAGACCG-GCTACTTG
↳ filler-D0002199 - L7	139.6M	41880.6Mb	0.5%	0.5%	39946.9Mb	95.4%	98.1%	1.9%	39.1	CCAGACCG-GCTACTTG
filler-D0002285	555.5M	166652.5Mb	1.9%	1.9%	158330.3Mb	95.0%	97.6%	2.4%	39.0	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L2	67.8M	20331.1Mb	0.2%	0.2%	19296.1Mb	94.9%	96.7%	3.3%	38.9	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L4	69.1M	20737.0Mb	0.2%	0.2%	19661.5Mb	94.8%	97.7%	2.3%	38.9	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L1	68.0M	20392.4Mb	0.2%	0.2%	19356.2Mb	94.9%	98.1%	1.9%	39.0	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L3	69.6M	20865.1Mb	0.2%	0.2%	19810.2Mb	94.9%	96.5%	3.5%	39.0	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L6	69.2M	20750.9Mb	0.2%	0.2%	19716.2Mb	95.0%	98.1%	1.9%	39.0	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L5	69.8M	20930.6Mb	0.2%	0.2%	19897.5Mb	95.1%	97.8%	2.2%	39.0	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L8	71.8M	21533.9Mb	0.2%	0.2%	20516.6Mb	95.3%	98.1%	1.9%	39.0	ACCGAATA-TCAGCATC
↳ filler-D0002285 - L7	70.4M	21111.4Mb	0.2%	0.2%	20076.0Mb	95.1%	98.0%	2.0%	39.0	ACCGAATA-TCAGCATC
filler-D0002463	995.6M	298694.0Mb	3.4%	3.4%	284542.3Mb	95.3%	97.8%	2.2%	39.0	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L2	122.0M	36604.5Mb	0.4%	0.4%	34841.3Mb	95.2%	96.9%	3.1%	39.0	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L4	122.9M	36864.4Mb	0.4%	0.4%	35050.0Mb	95.1%	97.9%	2.1%	39.0	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L1	122.4M	36710.4Mb	0.4%	0.4%	34931.3Mb	95.2%	98.3%	1.7%	39.0	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L3	124.2M	37255.7Mb	0.4%	0.4%	35471.7Mb	95.2%	96.8%	3.2%	39.0	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L6	125.0M	37501.1Mb	0.4%	0.4%	35721.9Mb	95.3%	98.3%	1.7%	39.0	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L5	125.3M	37599.1Mb	0.4%	0.4%	35841.3Mb	95.3%	98.0%	2.0%	39.1	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L8	127.3M	38199.0Mb	0.4%	0.4%	36490.3Mb	95.5%	98.3%	1.7%	39.1	AGGATGTC-ACTGGACG
↳ filler-D0002463 - L7	126.5M	37959.7Mb	0.4%	0.4%	36194.5Mb	95.3%	98.2%	1.8%	39.1	AGGATGTC-ACTGGACG
filler-D0002606	918.1M	275432.3Mb	3.1%	3.1%	261972.6Mb	95.1%	97.9%	2.1%	39.0	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L2	112.5M	33750.6Mb	0.4%	0.4%	32070.2Mb	95.0%	97.0%	3.0%	39.0	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L4	113.5M	34063.5Mb	0.4%	0.4%	32329.5Mb	94.9%	98.0%	2.0%	39.0	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L1	113.1M	33920.6Mb	0.4%	0.4%	32227.3Mb	95.0%	98.4%	1.6%	39.0	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L3	114.3M	34291.2Mb	0.4%	0.4%	32590.0Mb	95.0%	96.8%	3.2%	39.0	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L6	115.3M	34580.1Mb	0.4%	0.4%	32891.2Mb	95.1%	98.5%	1.5%	39.0	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L5	115.5M	34647.3Mb	0.4%	0.4%	32975.7Mb	95.2%	98.0%	2.0%	39.0	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L8	117.3M	35203.9Mb	0.4%	0.4%	33587.2Mb	95.4%	98.4%	1.6%	39.1	TTCCTCAC-ACATGAGC
↳ filler-D0002606 - L7	116.6M	34975.2Mb	0.4%	0.4%	33301.6Mb	95.2%	98.3%	1.7%	39.0	TTCCTCAC-ACATGAGC
filler-D0002607	800.6M	240184.7Mb	2.7%	2.7%	228198.7Mb	95.0%	98.1%	1.9%	39.0	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L2	98.2M	29446.4Mb	0.3%	0.3%	27946.9Mb	94.9%	97.1%	2.9%	38.9	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L4	99.0M	29708.5Mb	0.3%	0.3%	28167.9Mb	94.8%	98.1%	1.9%	38.9	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L1	98.6M	29570.3Mb	0.3%	0.3%	28066.4Mb	94.9%	98.5%	1.5%	39.0	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L3	99.9M	29955.7Mb	0.3%	0.3%	28440.3Mb	94.9%	96.9%	3.1%	39.0	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L6	100.0M	30002.9Mb	0.3%	0.3%	28508.2Mb	95.0%	98.6%	1.4%	39.0	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L5	100.6M	30182.0Mb	0.3%	0.3%	28694.5Mb	95.1%	98.2%	1.8%	39.0	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L8	102.9M	30880.7Mb	0.3%	0.3%	29427.2Mb	95.3%	98.5%	1.5%	39.0	CTTGCTAT-TAGAGTCA
↳ filler-D0002607 - L7	101.5M	30438.3Mb	0.3%	0.3%	28947.3Mb	95.1%	98.4%	1.6%	39.0	CTTGCTAT-TAGAGTCA
filler-D0002686	772.2M	231668.3Mb	2.6%	2.6%	220328.4Mb	95.1%	98.2%	1.8%	39.0	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L2	94.7M	28415.8Mb	0.3%	0.3%	27001.2Mb	95.0%	97.3%	2.7%	39.0	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L4	95.3M	28594.4Mb	0.3%	0.3%	27137.8Mb	94.9%	98.3%	1.7%	39.0	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L1	95.0M	28487.6Mb	0.3%	0.3%	27060.8Mb	95.0%	98.7%	1.3%	39.0	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L3	96.2M	28849.3Mb	0.3%	0.3%	27417.0Mb	95.0%	97.1%	2.9%	39.0	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L6	97.0M	29096.7Mb	0.3%	0.3%	27672.3Mb	95.1%	98.7%	1.3%	39.0	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L5	97.1M	29126.5Mb	0.3%	0.3%	27720.4Mb	95.2%	98.3%	1.7%	39.0	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L8	99.0M	29686.8Mb	0.3%	0.3%	28318.4Mb	95.4%	98.7%	1.3%	39.1	TTCTCTTA-TCCTCGAG
↳ filler-D0002686 - L7	98.0M	29411.3Mb	0.3%	0.3%	28000.5Mb	95.2%	98.6%	1.4%	39.0	TTCTCTTA-TCCTCGAG
filler-D0002735	1311.9M	393564.0Mb	4.4%	4.4%	374699.1Mb	95.2%	98.0%	2.0%	39.0	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L2	160.9M	48258.9Mb	0.5%	0.5%	45898.7Mb	95.1%	97.1%	2.9%	39.0	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L4	161.0M	48299.7Mb	0.5%	0.5%	45884.4Mb	95.0%	98.1%	1.9%	39.0	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L1	161.0M	48293.4Mb	0.5%	0.5%	45937.9Mb	95.1%	98.5%	1.5%	39.0	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L3	163.3M	48998.5Mb	0.6%	0.6%	46615.8Mb	95.1%	97.0%	3.0%	39.0	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L6	164.5M	49345.5Mb	0.6%	0.6%	46981.9Mb	95.2%	98.5%	1.5%	39.0	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L5	164.9M	49469.9Mb	0.6%	0.6%	47123.4Mb	95.3%	98.2%	1.8%	39.0	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L8	169.4M	50834.6Mb	0.6%	0.6%	48546.1Mb	95.5%	98.5%	1.5%	39.1	TTACTTCG-AAGATCGG
↳ filler-D0002735 - L7	166.9M	50063.4Mb	0.6%	0.6%	47710.8Mb	95.3%	98.4%	1.6%	39.0	TTACTTCG-AAGATCGG

Expand table

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: bclconvert-sample-stats-table_table

Sort	Column	Description	ID	Scale
\|\|	Clusters	Total number of clusters (read pairs) for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert-clusters`	read_count
\|\|	Yield	Total number of bases for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert-yield`	base_count
\|\|	Clusters/run	Percentage of clusters (read pairs) for this sample in this run, as determined by bclconvert demultiplexing	`bclconvert-percent_clusters`
\|\|	Yield/run	Percentage of sequenced bases for this sample in this run	`bclconvert-percent_yield`
\|\|	Bases ≥ Q30 (PF)	Number of bases with a Phred score of 30 or higher, passing filter (millions)	`bclconvert-yield_q30`	base_count
\|\|	Bases ≥ Q30 (PF)	Percent of bases with a Phred score of 30 or higher, passing filter (millions)	`bclconvert-percent_yield_q30`
\|\|	Perfect index	Percent of reads with perfect index (0 mismatches)	`bclconvert-percent_perfect_index_reads`
\|\|	One mismatch index	Percent of reads with one mismatch index	`bclconvert-percent_one_mismatch_index_reads`
\|\|	Mean quality score	Mean quality score of bases	`bclconvert-mean_quality`
\|\|	Index	Sample index	`bclconvert-index`
\|\|	Project	Sample project	`bclconvert-sample_project`

Lane Statistics

Statistics about each lane for each flowcell

Showing ⁸/₈ rows and ⁸/₈ columns.

Run ID - Lane	Clusters	Yield	Bases ≥ Q30 (PF)	Perfect index	One mismatch	Perfect index	One mismatch	Mean quality score
L1	3621.7M	1086511.6Mb	95.1%	3559.4M	62.3M	98.3%	1.7%	39.0
↳ L1 - T21-D0003169	195.0M	58493.2Mb	94.9%	191.7M	3.3M	98.3%	1.7%	39.0
↳ L1 - T21-D0002994	114.1M	34243.7Mb	95.2%	110.1M	4.1M	96.4%	3.6%	39.0
↳ L1 - T13-D0003573	178.7M	53603.8Mb	95.3%	175.7M	3.0M	98.3%	1.7%	39.0
↳ L1 - T13-D0003273	119.7M	35915.3Mb	95.2%	117.8M	1.9M	98.4%	1.6%	39.0
↳ L1 - T18-D0003095	129.8M	38954.7Mb	95.1%	128.1M	1.8M	98.6%	1.4%	39.0
↳ L1 - T18-D0003137	89.6M	26870.6Mb	94.8%	88.1M	1.5M	98.4%	1.6%	38.9
↳ L1 - LOW_FF-D0001384	358.6M	107580.9Mb	95.1%	351.5M	7.1M	98.0%	2.0%	39.0
↳ L1 - filler-D0000674	89.3M	26801.5Mb	94.9%	88.0M	1.4M	98.5%	1.5%	39.0
↳ L1 - filler-D0001217	0.0M	0.0Mb	96.7%	0.0M	0.0M	98.9%	1.1%	39.3
↳ L1 - filler-D0002607	98.6M	29570.3Mb	94.9%	97.1M	1.4M	98.5%	1.5%	39.0
↳ L1 - filler-D0000548	96.4M	28922.3Mb	94.8%	94.6M	1.8M	98.1%	1.9%	38.9
↳ L1 - filler-D0002606	113.1M	33920.6Mb	95.0%	111.3M	1.8M	98.4%	1.6%	39.0
↳ L1 - filler-D0000668	79.4M	23823.8Mb	94.7%	78.1M	1.3M	98.4%	1.6%	38.9
↳ L1 - filler-D0001376	74.0M	22190.9Mb	95.1%	72.6M	1.4M	98.1%	1.9%	39.0
↳ L1 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L1 - filler-D0001776	93.5M	28039.9Mb	94.9%	92.1M	1.4M	98.5%	1.5%	39.0
↳ L1 - filler-D0001324	108.5M	32546.0Mb	95.1%	107.1M	1.4M	98.7%	1.3%	39.0
↳ L1 - filler-D0002686	95.0M	28487.6Mb	95.0%	93.7M	1.2M	98.7%	1.3%	39.0
↳ L1 - filler-D0000644	105.0M	31497.5Mb	95.1%	103.3M	1.7M	98.4%	1.6%	39.0
↳ L1 - filler-D0001021	102.8M	30854.7Mb	95.0%	100.7M	2.1M	98.0%	2.0%	39.0
↳ L1 - filler-D0002199	135.5M	40661.6Mb	95.2%	133.0M	2.5M	98.1%	1.9%	39.0
↳ L1 - filler-D0001310	128.7M	38595.3Mb	95.2%	126.3M	2.3M	98.2%	1.8%	39.0
↳ L1 - filler-D0002285	68.0M	20392.4Mb	94.9%	66.7M	1.3M	98.1%	1.9%	39.0
↳ L1 - filler-D0000822	120.7M	36208.5Mb	95.2%	119.0M	1.7M	98.6%	1.4%	39.0
↳ L1 - filler-D0002735	161.0M	48293.4Mb	95.1%	158.6M	2.4M	98.5%	1.5%	39.0
↳ L1 - T21-D0002837	124.4M	37315.3Mb	94.8%	122.7M	1.7M	98.7%	1.3%	38.9
↳ L1 - filler-D0000192	129.4M	38806.8Mb	95.2%	127.6M	1.7M	98.7%	1.3%	39.0
↳ L1 - filler-D0000329	98.9M	29655.6Mb	95.2%	97.2M	1.7M	98.3%	1.7%	39.0
↳ L1 - filler-D0002463	122.4M	36710.4Mb	95.2%	120.3M	2.1M	98.3%	1.7%	39.0
↳ L1 - filler-D0000555	73.0M	21892.5Mb	95.0%	71.8M	1.2M	98.4%	1.6%	39.0
↳ L1 - filler-D0000114	109.7M	32922.3Mb	95.1%	107.6M	2.1M	98.1%	1.9%	39.0
↳ L1 - NTC-D0002235	109.1M	32740.3Mb	95.1%	107.1M	2.0M	98.1%	1.9%	39.0
L2	3611.8M	1083541.9Mb	95.1%	3499.6M	112.2M	96.9%	3.1%	39.0
↳ L2 - T21-D0003169	195.1M	58531.1Mb	94.9%	189.1M	6.0M	96.9%	3.1%	38.9
↳ L2 - T21-D0002994	113.5M	34052.6Mb	95.3%	108.0M	5.5M	95.1%	4.9%	39.0
↳ L2 - T13-D0003573	177.6M	53279.0Mb	95.3%	172.1M	5.4M	96.9%	3.1%	39.0
↳ L2 - T13-D0003273	119.1M	35737.5Mb	95.2%	115.6M	3.5M	97.0%	3.0%	39.0
↳ L2 - T18-D0003095	129.5M	38859.9Mb	95.2%	126.0M	3.6M	97.2%	2.8%	39.0
↳ L2 - T18-D0003137	89.5M	26839.6Mb	94.8%	86.7M	2.7M	96.9%	3.1%	38.9
↳ L2 - LOW_FF-D0001384	356.2M	106861.3Mb	95.1%	344.4M	11.8M	96.7%	3.3%	39.0
↳ L2 - filler-D0000674	89.9M	26963.6Mb	94.9%	87.2M	2.6M	97.1%	2.9%	38.9
↳ L2 - filler-D0001217	0.0M	0.0Mb	95.8%	0.0M	0.0M	93.6%	6.4%	39.1
↳ L2 - filler-D0002607	98.2M	29446.4Mb	94.9%	95.3M	2.8M	97.1%	2.9%	38.9
↳ L2 - filler-D0000548	96.7M	29024.3Mb	94.8%	93.6M	3.1M	96.8%	3.2%	38.9
↳ L2 - filler-D0002606	112.5M	33750.6Mb	95.0%	109.1M	3.4M	97.0%	3.0%	39.0
↳ L2 - filler-D0000668	80.0M	24000.6Mb	94.6%	77.6M	2.4M	97.0%	3.0%	38.9
↳ L2 - filler-D0001376	73.8M	22132.3Mb	95.1%	71.4M	2.4M	96.8%	3.2%	39.0
↳ L2 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L2 - filler-D0001776	93.4M	28033.5Mb	94.9%	90.8M	2.7M	97.2%	2.8%	38.9
↳ L2 - filler-D0001324	108.8M	32634.6Mb	95.1%	105.8M	2.9M	97.3%	2.7%	39.0
↳ L2 - filler-D0002686	94.7M	28415.8Mb	95.0%	92.2M	2.6M	97.3%	2.7%	39.0
↳ L2 - filler-D0000644	104.6M	31388.5Mb	95.1%	101.5M	3.1M	97.0%	3.0%	39.0
↳ L2 - filler-D0001021	103.0M	30894.6Mb	95.0%	99.4M	3.6M	96.5%	3.5%	39.0
↳ L2 - filler-D0002199	135.0M	40497.9Mb	95.2%	130.6M	4.4M	96.7%	3.3%	39.0
↳ L2 - filler-D0001310	128.4M	38525.6Mb	95.2%	124.3M	4.1M	96.8%	3.2%	39.0
↳ L2 - filler-D0002285	67.8M	20331.1Mb	94.9%	65.5M	2.3M	96.7%	3.3%	38.9
↳ L2 - filler-D0000822	119.6M	35878.7Mb	95.2%	116.3M	3.3M	97.2%	2.8%	39.0
↳ L2 - filler-D0002735	160.9M	48258.9Mb	95.1%	156.2M	4.6M	97.1%	2.9%	39.0
↳ L2 - T21-D0002837	124.2M	37271.0Mb	94.8%	120.8M	3.4M	97.3%	2.7%	38.9
↳ L2 - filler-D0000192	128.5M	38536.5Mb	95.3%	124.9M	3.5M	97.3%	2.7%	39.0
↳ L2 - filler-D0000329	98.1M	29425.8Mb	95.2%	95.1M	3.0M	96.9%	3.1%	39.0
↳ L2 - filler-D0002463	122.0M	36604.5Mb	95.2%	118.2M	3.8M	96.9%	3.1%	39.0
↳ L2 - filler-D0000555	72.9M	21855.6Mb	95.0%	70.7M	2.2M	97.0%	3.0%	39.0
↳ L2 - filler-D0000114	109.3M	32801.3Mb	95.1%	105.7M	3.6M	96.7%	3.3%	39.0
↳ L2 - NTC-D0002235	109.0M	32709.4Mb	95.2%	105.4M	3.6M	96.7%	3.3%	39.0
L3	3683.7M	1105101.7Mb	95.1%	3565.8M	117.9M	96.8%	3.2%	39.0
↳ L3 - T21-D0003169	199.4M	59833.5Mb	95.0%	193.2M	6.2M	96.9%	3.1%	39.0
↳ L3 - T21-D0002994	116.7M	35003.3Mb	95.3%	110.9M	5.7M	95.1%	4.9%	39.0
↳ L3 - T13-D0003573	180.8M	54242.6Mb	95.3%	175.3M	5.5M	96.9%	3.1%	39.0
↳ L3 - T13-D0003273	121.7M	36524.9Mb	95.2%	117.9M	3.8M	96.8%	3.2%	39.0
↳ L3 - T18-D0003095	133.3M	40000.6Mb	95.2%	129.5M	3.9M	97.1%	2.9%	39.0
↳ L3 - T18-D0003137	91.3M	27387.0Mb	94.8%	88.4M	2.9M	96.8%	3.2%	38.9
↳ L3 - LOW_FF-D0001384	367.2M	110154.4Mb	95.1%	355.2M	12.0M	96.7%	3.3%	39.0
↳ L3 - filler-D0000674	91.0M	27294.6Mb	94.9%	88.3M	2.7M	97.0%	3.0%	39.0
↳ L3 - filler-D0001217	0.0M	0.0Mb	95.4%	0.0M	0.0M	100.0%	0.0%	39.1
↳ L3 - filler-D0002607	99.9M	29955.7Mb	94.9%	96.8M	3.1M	96.9%	3.1%	39.0
↳ L3 - filler-D0000548	98.6M	29570.5Mb	94.8%	95.2M	3.4M	96.6%	3.4%	38.9
↳ L3 - filler-D0002606	114.3M	34291.2Mb	95.0%	110.7M	3.6M	96.8%	3.2%	39.0
↳ L3 - filler-D0000668	81.0M	24306.8Mb	94.7%	78.5M	2.5M	96.9%	3.1%	38.9
↳ L3 - filler-D0001376	75.5M	22650.7Mb	95.1%	73.0M	2.5M	96.7%	3.3%	39.0
↳ L3 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L3 - filler-D0001776	94.6M	28368.2Mb	95.0%	91.8M	2.7M	97.1%	2.9%	39.0
↳ L3 - filler-D0001324	109.8M	32940.4Mb	95.1%	106.7M	3.1M	97.2%	2.8%	39.0
↳ L3 - filler-D0002686	96.2M	28849.3Mb	95.0%	93.4M	2.8M	97.1%	2.9%	39.0
↳ L3 - filler-D0000644	106.2M	31863.8Mb	95.1%	102.8M	3.4M	96.8%	3.2%	39.0
↳ L3 - filler-D0001021	105.4M	31624.6Mb	95.1%	101.8M	3.6M	96.5%	3.5%	39.0
↳ L3 - filler-D0002199	137.2M	41166.2Mb	95.2%	132.7M	4.5M	96.7%	3.3%	39.0
↳ L3 - filler-D0001310	130.5M	39135.8Mb	95.2%	126.1M	4.4M	96.7%	3.3%	39.0
↳ L3 - filler-D0002285	69.6M	20865.1Mb	94.9%	67.1M	2.5M	96.5%	3.5%	39.0
↳ L3 - filler-D0000822	122.7M	36799.3Mb	95.2%	119.2M	3.5M	97.2%	2.8%	39.0
↳ L3 - filler-D0002735	163.3M	48998.5Mb	95.1%	158.4M	5.0M	97.0%	3.0%	39.0
↳ L3 - T21-D0002837	126.6M	37976.4Mb	94.9%	122.9M	3.7M	97.1%	2.9%	38.9
↳ L3 - filler-D0000192	130.3M	39090.5Mb	95.3%	126.7M	3.6M	97.2%	2.8%	39.0
↳ L3 - filler-D0000329	100.8M	30229.5Mb	95.2%	97.6M	3.2M	96.8%	3.2%	39.0
↳ L3 - filler-D0002463	124.2M	37255.7Mb	95.2%	120.2M	4.0M	96.8%	3.2%	39.0
↳ L3 - filler-D0000555	73.3M	21993.7Mb	95.0%	71.0M	2.3M	96.8%	3.2%	39.0
↳ L3 - filler-D0000114	111.0M	33314.1Mb	95.1%	107.1M	3.9M	96.4%	3.6%	39.0
↳ L3 - NTC-D0002235	111.4M	33414.7Mb	95.2%	107.6M	3.8M	96.6%	3.4%	39.0
L4	3658.2M	1097474.7Mb	95.0%	3581.6M	76.7M	97.9%	2.1%	39.0
↳ L4 - T21-D0003169	197.6M	59283.6Mb	94.8%	193.6M	4.0M	98.0%	2.0%	38.9
↳ L4 - T21-D0002994	115.9M	34766.0Mb	95.2%	111.2M	4.7M	96.0%	4.0%	39.0
↳ L4 - T13-D0003573	180.0M	53994.1Mb	95.2%	176.3M	3.7M	98.0%	2.0%	39.0
↳ L4 - T13-D0003273	120.8M	36244.7Mb	95.1%	118.5M	2.4M	98.0%	2.0%	39.0
↳ L4 - T18-D0003095	132.4M	39714.2Mb	95.1%	130.1M	2.3M	98.3%	1.7%	39.0
↳ L4 - T18-D0003137	90.4M	27111.8Mb	94.7%	88.5M	1.8M	98.0%	2.0%	38.9
↳ L4 - LOW_FF-D0001384	368.1M	110441.3Mb	95.0%	359.8M	8.3M	97.7%	2.3%	39.0
↳ L4 - filler-D0000674	89.6M	26891.7Mb	94.8%	87.9M	1.7M	98.1%	1.9%	38.9
↳ L4 - filler-D0001217	0.0M	0.0Mb	95.4%	0.0M	0.0M	98.4%	1.6%	39.1
↳ L4 - filler-D0002607	99.0M	29708.5Mb	94.8%	97.2M	1.8M	98.1%	1.9%	38.9
↳ L4 - filler-D0000548	97.2M	29155.3Mb	94.7%	94.9M	2.3M	97.7%	2.3%	38.9
↳ L4 - filler-D0002606	113.5M	34063.5Mb	94.9%	111.3M	2.3M	98.0%	2.0%	39.0
↳ L4 - filler-D0000668	79.7M	23896.3Mb	94.5%	78.1M	1.6M	98.0%	2.0%	38.9
↳ L4 - filler-D0001376	75.2M	22564.1Mb	95.0%	73.6M	1.6M	97.8%	2.2%	39.0
↳ L4 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L4 - filler-D0001776	93.8M	28150.3Mb	94.8%	92.1M	1.7M	98.1%	1.9%	38.9
↳ L4 - filler-D0001324	108.9M	32660.9Mb	95.0%	107.0M	1.9M	98.3%	1.7%	39.0
↳ L4 - filler-D0002686	95.3M	28594.4Mb	94.9%	93.7M	1.6M	98.3%	1.7%	39.0
↳ L4 - filler-D0000644	105.4M	31608.9Mb	95.0%	103.2M	2.2M	97.9%	2.1%	39.0
↳ L4 - filler-D0001021	104.2M	31256.2Mb	94.9%	101.6M	2.5M	97.6%	2.4%	39.0
↳ L4 - filler-D0002199	136.3M	40892.4Mb	95.1%	133.2M	3.1M	97.7%	2.3%	39.0
↳ L4 - filler-D0001310	129.6M	38875.8Mb	95.1%	126.7M	2.9M	97.8%	2.2%	39.0
↳ L4 - filler-D0002285	69.1M	20737.0Mb	94.8%	67.5M	1.6M	97.7%	2.3%	38.9
↳ L4 - filler-D0000822	122.4M	36733.2Mb	95.1%	120.2M	2.2M	98.2%	1.8%	39.0
↳ L4 - filler-D0002735	161.0M	48299.7Mb	95.0%	158.0M	3.0M	98.1%	1.9%	39.0
↳ L4 - T21-D0002837	125.7M	37702.6Mb	94.7%	123.5M	2.2M	98.3%	1.7%	38.9
↳ L4 - filler-D0000192	130.0M	38996.8Mb	95.2%	127.8M	2.2M	98.3%	1.7%	39.0
↳ L4 - filler-D0000329	101.1M	30333.3Mb	95.1%	99.1M	2.0M	98.0%	2.0%	39.0
↳ L4 - filler-D0002463	122.9M	36864.4Mb	95.1%	120.3M	2.6M	97.9%	2.1%	39.0
↳ L4 - filler-D0000555	72.8M	21846.4Mb	94.9%	71.4M	1.4M	98.0%	2.0%	39.0
↳ L4 - filler-D0000114	110.2M	33067.2Mb	95.0%	107.6M	2.6M	97.7%	2.3%	39.0
↳ L4 - NTC-D0002235	110.1M	33020.1Mb	95.0%	107.6M	2.5M	97.7%	2.3%	39.0
L5	3710.6M	1113189.7Mb	95.2%	3634.9M	75.7M	98.0%	2.0%	39.0
↳ L5 - T21-D0003169	201.2M	60353.9Mb	95.1%	197.2M	4.0M	98.0%	2.0%	39.0
↳ L5 - T21-D0002994	117.0M	35090.2Mb	95.4%	112.5M	4.5M	96.1%	3.9%	39.1
↳ L5 - T13-D0003573	182.1M	54624.4Mb	95.5%	178.5M	3.6M	98.0%	2.0%	39.1
↳ L5 - T13-D0003273	122.4M	36719.1Mb	95.3%	120.1M	2.3M	98.1%	1.9%	39.1
↳ L5 - T18-D0003095	133.7M	40109.8Mb	95.3%	131.4M	2.3M	98.3%	1.7%	39.0
↳ L5 - T18-D0003137	91.6M	27466.8Mb	94.9%	89.8M	1.8M	98.0%	2.0%	39.0
↳ L5 - LOW_FF-D0001384	368.2M	110473.4Mb	95.2%	360.0M	8.2M	97.8%	2.2%	39.0
↳ L5 - filler-D0000674	92.2M	27661.3Mb	95.1%	90.5M	1.7M	98.1%	1.9%	39.0
↳ L5 - filler-D0001217	0.0M	0.0Mb	93.8%	0.0M	0.0M	95.2%	4.8%	38.7
↳ L5 - filler-D0002607	100.6M	30182.0Mb	95.1%	98.8M	1.8M	98.2%	1.8%	39.0
↳ L5 - filler-D0000548	99.3M	29788.5Mb	94.9%	96.9M	2.4M	97.6%	2.4%	39.0
↳ L5 - filler-D0002606	115.5M	34647.3Mb	95.2%	113.2M	2.3M	98.0%	2.0%	39.0
↳ L5 - filler-D0000668	82.3M	24685.1Mb	94.8%	80.7M	1.6M	98.1%	1.9%	38.9
↳ L5 - filler-D0001376	75.7M	22724.2Mb	95.2%	74.1M	1.6M	97.8%	2.2%	39.0
↳ L5 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L5 - filler-D0001776	95.6M	28670.0Mb	95.1%	93.8M	1.7M	98.2%	1.8%	39.0
↳ L5 - filler-D0001324	111.4M	33424.0Mb	95.3%	109.6M	1.8M	98.3%	1.7%	39.0
↳ L5 - filler-D0002686	97.1M	29126.5Mb	95.2%	95.4M	1.7M	98.3%	1.7%	39.0
↳ L5 - filler-D0000644	107.1M	32120.8Mb	95.2%	105.0M	2.1M	98.0%	2.0%	39.0
↳ L5 - filler-D0001021	106.0M	31809.8Mb	95.2%	103.5M	2.5M	97.7%	2.3%	39.0
↳ L5 - filler-D0002199	138.5M	41560.1Mb	95.4%	135.5M	3.0M	97.8%	2.2%	39.1
↳ L5 - filler-D0001310	131.7M	39504.5Mb	95.3%	128.8M	2.8M	97.8%	2.2%	39.0
↳ L5 - filler-D0002285	69.8M	20930.6Mb	95.1%	68.2M	1.6M	97.8%	2.2%	39.0
↳ L5 - filler-D0000822	122.6M	36770.9Mb	95.3%	120.4M	2.1M	98.3%	1.7%	39.1
↳ L5 - filler-D0002735	164.9M	49469.9Mb	95.3%	161.9M	3.0M	98.2%	1.8%	39.0
↳ L5 - T21-D0002837	127.5M	38243.0Mb	95.0%	125.3M	2.2M	98.3%	1.7%	39.0
↳ L5 - filler-D0000192	131.5M	39444.4Mb	95.4%	129.3M	2.2M	98.3%	1.7%	39.1
↳ L5 - filler-D0000329	100.8M	30246.7Mb	95.3%	98.9M	2.0M	98.0%	2.0%	39.1
↳ L5 - filler-D0002463	125.3M	37599.1Mb	95.3%	122.8M	2.5M	98.0%	2.0%	39.1
↳ L5 - filler-D0000555	74.6M	22367.3Mb	95.1%	73.1M	1.4M	98.1%	1.9%	39.0
↳ L5 - filler-D0000114	112.4M	33733.6Mb	95.2%	109.9M	2.5M	97.7%	2.3%	39.0
↳ L5 - NTC-D0002235	112.1M	33642.4Mb	95.3%	109.7M	2.4M	97.8%	2.2%	39.0
L6	3688.5M	1106536.8Mb	95.2%	3626.3M	62.1M	98.3%	1.7%	39.0
↳ L6 - T21-D0003169	199.6M	59881.7Mb	95.0%	196.3M	3.3M	98.3%	1.7%	39.0
↳ L6 - T21-D0002994	116.1M	34824.8Mb	95.4%	112.0M	4.1M	96.5%	3.5%	39.1
↳ L6 - T13-D0003573	181.9M	54574.3Mb	95.4%	179.0M	2.9M	98.4%	1.6%	39.1
↳ L6 - T13-D0003273	121.8M	36550.3Mb	95.3%	120.0M	1.9M	98.5%	1.5%	39.0
↳ L6 - T18-D0003095	132.3M	39690.3Mb	95.2%	130.5M	1.8M	98.7%	1.3%	39.0
↳ L6 - T18-D0003137	90.4M	27125.2Mb	94.9%	89.0M	1.5M	98.4%	1.6%	39.0
↳ L6 - LOW_FF-D0001384	362.6M	108788.3Mb	95.2%	355.6M	7.0M	98.1%	1.9%	39.0
↳ L6 - filler-D0000674	91.8M	27525.2Mb	95.0%	90.4M	1.4M	98.5%	1.5%	39.0
↳ L6 - filler-D0001217	0.0M	0.0Mb	93.5%	0.0M	0.0M	97.1%	2.9%	38.7
↳ L6 - filler-D0002607	100.0M	30002.9Mb	95.0%	98.6M	1.4M	98.6%	1.4%	39.0
↳ L6 - filler-D0000548	98.5M	29536.6Mb	94.9%	96.6M	1.9M	98.1%	1.9%	39.0
↳ L6 - filler-D0002606	115.3M	34580.1Mb	95.1%	113.5M	1.8M	98.5%	1.5%	39.0
↳ L6 - filler-D0000668	82.2M	24651.3Mb	94.7%	80.9M	1.3M	98.4%	1.6%	38.9
↳ L6 - filler-D0001376	74.9M	22475.1Mb	95.1%	73.6M	1.4M	98.2%	1.8%	39.0
↳ L6 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L6 - filler-D0001776	95.4M	28609.0Mb	95.0%	94.0M	1.4M	98.6%	1.4%	39.0
↳ L6 - filler-D0001324	111.6M	33468.2Mb	95.2%	110.1M	1.4M	98.7%	1.3%	39.0
↳ L6 - filler-D0002686	97.0M	29096.7Mb	95.1%	95.7M	1.3M	98.7%	1.3%	39.0
↳ L6 - filler-D0000644	106.7M	32020.9Mb	95.2%	105.1M	1.7M	98.4%	1.6%	39.0
↳ L6 - filler-D0001021	105.0M	31502.1Mb	95.1%	102.9M	2.1M	98.0%	2.0%	39.0
↳ L6 - filler-D0002199	138.5M	41544.3Mb	95.3%	136.0M	2.5M	98.2%	1.8%	39.0
↳ L6 - filler-D0001310	131.4M	39426.7Mb	95.3%	129.1M	2.3M	98.2%	1.8%	39.0
↳ L6 - filler-D0002285	69.2M	20750.9Mb	95.0%	67.9M	1.3M	98.1%	1.9%	39.0
↳ L6 - filler-D0000822	121.6M	36487.8Mb	95.3%	119.9M	1.7M	98.6%	1.4%	39.0
↳ L6 - filler-D0002735	164.5M	49345.5Mb	95.2%	162.1M	2.4M	98.5%	1.5%	39.0
↳ L6 - T21-D0002837	126.8M	38046.9Mb	94.9%	125.2M	1.7M	98.7%	1.3%	39.0
↳ L6 - filler-D0000192	130.6M	39166.1Mb	95.3%	128.8M	1.7M	98.7%	1.3%	39.1
↳ L6 - filler-D0000329	99.6M	29887.8Mb	95.3%	98.0M	1.6M	98.3%	1.7%	39.0
↳ L6 - filler-D0002463	125.0M	37501.1Mb	95.3%	122.9M	2.1M	98.3%	1.7%	39.0
↳ L6 - filler-D0000555	74.2M	22251.6Mb	95.1%	73.0M	1.1M	98.5%	1.5%	39.0
↳ L6 - filler-D0000114	112.3M	33686.3Mb	95.2%	110.2M	2.1M	98.1%	1.9%	39.0
↳ L6 - NTC-D0002235	111.8M	33538.7Mb	95.2%	109.8M	2.0M	98.2%	1.8%	39.0
L7	3732.4M	1119713.5Mb	95.3%	3665.2M	67.2M	98.2%	1.8%	39.0
↳ L7 - T21-D0003169	201.8M	60539.7Mb	95.1%	198.2M	3.6M	98.2%	1.8%	39.0
↳ L7 - T21-D0002994	117.6M	35271.6Mb	95.4%	113.5M	4.1M	96.5%	3.5%	39.1
↳ L7 - T13-D0003573	183.0M	54899.2Mb	95.5%	179.8M	3.2M	98.3%	1.7%	39.1
↳ L7 - T13-D0003273	123.6M	37086.1Mb	95.4%	121.6M	2.0M	98.3%	1.7%	39.1
↳ L7 - T18-D0003095	134.1M	40225.8Mb	95.3%	132.1M	1.9M	98.5%	1.5%	39.1
↳ L7 - T18-D0003137	92.2M	27667.0Mb	95.0%	90.6M	1.6M	98.2%	1.8%	39.0
↳ L7 - LOW_FF-D0001384	366.5M	109938.2Mb	95.3%	358.9M	7.6M	97.9%	2.1%	39.0
↳ L7 - filler-D0000674	92.8M	27844.5Mb	95.1%	91.3M	1.5M	98.4%	1.6%	39.0
↳ L7 - filler-D0001217	0.0M	0.0Mb	94.6%	0.0M	0.0M	98.7%	1.3%	38.9
↳ L7 - filler-D0002607	101.5M	30438.3Mb	95.1%	99.9M	1.6M	98.4%	1.6%	39.0
↳ L7 - filler-D0000548	100.1M	30023.3Mb	95.0%	98.0M	2.0M	98.0%	2.0%	39.0
↳ L7 - filler-D0002606	116.6M	34975.2Mb	95.2%	114.6M	1.9M	98.3%	1.7%	39.0
↳ L7 - filler-D0000668	83.1M	24927.3Mb	94.8%	81.7M	1.4M	98.3%	1.7%	38.9
↳ L7 - filler-D0001376	76.0M	22796.7Mb	95.2%	74.5M	1.5M	98.1%	1.9%	39.0
↳ L7 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L7 - filler-D0001776	96.4M	28916.8Mb	95.1%	94.9M	1.5M	98.5%	1.5%	39.0
↳ L7 - filler-D0001324	112.3M	33689.2Mb	95.3%	110.7M	1.6M	98.6%	1.4%	39.0
↳ L7 - filler-D0002686	98.0M	29411.3Mb	95.2%	96.7M	1.4M	98.6%	1.4%	39.0
↳ L7 - filler-D0000644	108.0M	32403.0Mb	95.3%	106.2M	1.8M	98.3%	1.7%	39.0
↳ L7 - filler-D0001021	106.7M	32008.1Mb	95.2%	104.4M	2.3M	97.9%	2.1%	39.0
↳ L7 - filler-D0002199	139.6M	41880.6Mb	95.4%	136.9M	2.7M	98.1%	1.9%	39.1
↳ L7 - filler-D0001310	132.8M	39825.2Mb	95.4%	130.2M	2.5M	98.1%	1.9%	39.1
↳ L7 - filler-D0002285	70.4M	21111.4Mb	95.1%	69.0M	1.4M	98.0%	2.0%	39.0
↳ L7 - filler-D0000822	123.3M	37003.8Mb	95.4%	121.5M	1.9M	98.5%	1.5%	39.1
↳ L7 - filler-D0002735	166.9M	50063.4Mb	95.3%	164.2M	2.7M	98.4%	1.6%	39.0
↳ L7 - T21-D0002837	128.6M	38565.2Mb	95.0%	126.7M	1.9M	98.6%	1.4%	39.0
↳ L7 - filler-D0000192	131.9M	39572.1Mb	95.4%	130.0M	1.9M	98.6%	1.4%	39.1
↳ L7 - filler-D0000329	100.9M	30283.8Mb	95.4%	99.2M	1.8M	98.2%	1.8%	39.1
↳ L7 - filler-D0002463	126.5M	37959.7Mb	95.3%	124.3M	2.3M	98.2%	1.8%	39.1
↳ L7 - filler-D0000555	75.0M	22491.2Mb	95.2%	73.7M	1.3M	98.3%	1.7%	39.0
↳ L7 - filler-D0000114	113.2M	33972.2Mb	95.3%	110.9M	2.3M	98.0%	2.0%	39.0
↳ L7 - NTC-D0002235	113.1M	33923.6Mb	95.3%	110.9M	2.1M	98.1%	1.9%	39.0
L8	3776.2M	1132873.3Mb	95.4%	3711.5M	64.7M	98.3%	1.7%	39.1
↳ L8 - T21-D0003169	203.6M	61065.9Mb	95.3%	200.0M	3.5M	98.3%	1.7%	39.0
↳ L8 - T21-D0002994	118.8M	35652.3Mb	95.6%	115.0M	3.8M	96.8%	3.2%	39.1
↳ L8 - T13-D0003573	183.8M	55144.4Mb	95.7%	180.8M	3.0M	98.4%	1.6%	39.1
↳ L8 - T13-D0003273	125.1M	37526.6Mb	95.5%	123.1M	2.0M	98.4%	1.6%	39.1
↳ L8 - T18-D0003095	135.6M	40678.3Mb	95.5%	133.7M	1.9M	98.6%	1.4%	39.1
↳ L8 - T18-D0003137	94.8M	28449.9Mb	95.2%	93.2M	1.6M	98.3%	1.7%	39.0
↳ L8 - LOW_FF-D0001384	371.9M	111578.7Mb	95.5%	364.5M	7.4M	98.0%	2.0%	39.1
↳ L8 - filler-D0000674	93.8M	28153.9Mb	95.3%	92.4M	1.4M	98.5%	1.5%	39.0
↳ L8 - filler-D0001217	0.0M	0.0Mb	93.5%	0.0M	0.0M	98.8%	1.2%	38.7
↳ L8 - filler-D0002607	102.9M	30880.7Mb	95.3%	101.4M	1.5M	98.5%	1.5%	39.0
↳ L8 - filler-D0000548	101.8M	30538.0Mb	95.2%	99.8M	2.0M	98.1%	1.9%	39.0
↳ L8 - filler-D0002606	117.3M	35203.9Mb	95.4%	115.5M	1.9M	98.4%	1.6%	39.1
↳ L8 - filler-D0000668	83.6M	25086.3Mb	95.0%	82.3M	1.4M	98.4%	1.6%	39.0
↳ L8 - filler-D0001376	77.3M	23188.0Mb	95.4%	75.9M	1.4M	98.2%	1.8%	39.1
↳ L8 - filler-D0001664	0.0M	0.0Mb		0.0M	0.0M
↳ L8 - filler-D0001776	97.7M	29308.4Mb	95.3%	96.3M	1.4M	98.5%	1.5%	39.0
↳ L8 - filler-D0001324	113.0M	33896.6Mb	95.5%	111.5M	1.5M	98.7%	1.3%	39.1
↳ L8 - filler-D0002686	99.0M	29686.8Mb	95.4%	97.6M	1.3M	98.7%	1.3%	39.1
↳ L8 - filler-D0000644	109.4M	32820.7Mb	95.5%	107.6M	1.8M	98.4%	1.6%	39.1
↳ L8 - filler-D0001021	108.0M	32410.4Mb	95.4%	105.8M	2.2M	98.0%	2.0%	39.1
↳ L8 - filler-D0002199	140.0M	41995.3Mb	95.6%	137.4M	2.5M	98.2%	1.8%	39.1
↳ L8 - filler-D0001310	133.6M	40094.2Mb	95.6%	131.3M	2.4M	98.2%	1.8%	39.1
↳ L8 - filler-D0002285	71.8M	21533.9Mb	95.3%	70.4M	1.4M	98.1%	1.9%	39.0
↳ L8 - filler-D0000822	125.5M	37655.7Mb	95.5%	123.7M	1.8M	98.6%	1.4%	39.1
↳ L8 - filler-D0002735	169.4M	50834.6Mb	95.5%	166.9M	2.6M	98.5%	1.5%	39.1
↳ L8 - T21-D0002837	130.5M	39152.9Mb	95.2%	128.7M	1.8M	98.6%	1.4%	39.0
↳ L8 - filler-D0000192	134.1M	40224.6Mb	95.6%	132.3M	1.8M	98.6%	1.4%	39.1
↳ L8 - filler-D0000329	102.5M	30742.8Mb	95.6%	100.7M	1.8M	98.3%	1.7%	39.1
↳ L8 - filler-D0002463	127.3M	38199.0Mb	95.5%	125.1M	2.2M	98.3%	1.7%	39.1
↳ L8 - filler-D0000555	76.2M	22863.0Mb	95.3%	75.0M	1.2M	98.4%	1.6%	39.0
↳ L8 - filler-D0000114	113.7M	34118.8Mb	95.4%	111.5M	2.2M	98.1%	1.9%	39.1
↳ L8 - NTC-D0002235	114.0M	34188.8Mb	95.5%	111.9M	2.1M	98.2%	1.8%	39.1

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: bclconvert-lane-stats-table_table

Sort	Column	Description	ID	Scale
\|\|	Clusters	Total number of clusters (read pairs) for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert_lane-clusters`	read_count
\|\|	Yield	Total number of bases for this sample as determined by bclconvert demultiplexing (millions)	`bclconvert_lane-yield`	base_count
\|\|	Bases ≥ Q30 (PF)	Percent of bases with a Phred score of 30 or higher, passing filter	`bclconvert_lane-percent_yield_q30`
\|\|	Perfect index	Reads with perfect index - 0 mismatches (millions)	`bclconvert_lane-perfect_index_reads`	read_count
\|\|	One mismatch	Reads with one mismatch index (millions)	`bclconvert_lane-one_mismatch_index_reads`	read_count
\|\|	Perfect index	Percent of reads with perfect index - 0 mismatches	`bclconvert_lane-percent_perfect_index_reads`
\|\|	One mismatch	Percent of reads with one mismatch	`bclconvert_lane-percent_one_mismatch_index_reads`
\|\|	Mean quality score	Mean quality score of bases	`bclconvert_lane-mean_quality`

Clusters by lane

Number of reads per lane (with number of perfect index reads).

Warning: Found multiple runs from the same sequencer output. Runs were merged and Undetermined Reads were recalculated.

Perfect index reads are those that do not have a single mismatch. All samples of a lane are combined. Undetermined reads are treated as a third category.

Created with MultiQC

Clusters by sample

Number of reads per sample.

Perfect index reads are those that do not have a single mismatch. All samples are aggregated across lanes combined. Undetermined reads are ignored. Undetermined reads are treated as a separate sample.

Created with MultiQC

Undetermined barcodes

Top 40 undetermined barcodes

Created with MultiQC

Software Versions

Software Versions lists versions of software tools extracted from file contents.

Group	Software	Version
Sambamba	Sambamba	`1.0.1`
Samtools	HTSlib	`1.23`
	Samtools	`1.21`
UMI-tools	UMI-tools	`1.1.5`
fastp	fastp	`1.0.1`

20251230_LH00166_0226_B23H33FLT4 DAQ-UMI Report

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20251230_LH00166_0226_B23H33FLT4 DAQ-UMI Report

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UMI Stats Help

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UMI-tools: UMI stats: Columns

fastp

Filtered Reads

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Insert Sizes

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Sequence Quality

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GC Content

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N content

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BCL Convert

Sample Statistics

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bclconvert Sample Statistics: Columns

Lane Statistics

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bclconvert Lane Statistics: Columns

Clusters by lane Help

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Clusters by sample Help

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Undetermined barcodes

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Software Versions

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Highlight Samples

Rename Samples

Show / Hide Samples

Choose Plots

Percent mapped

Sambamba Markdup

UMI Stats

Clusters by lane

Clusters by sample