Error executing process > 'SENTIEON_ALIGN_QC (test_sample_1)'

Caused by:
  Process `SENTIEON_ALIGN_QC (test_sample_1)` terminated with an error exit status (1)


Command executed:

  echo "=== Running Sentieon Alignment and QC on test_sample_1 ==="
  echo "SENTIEON_LICENSE: ${SENTIEON_LICENSE:0:5}..."
  echo "Downsampling to 100 reads (400 lines)"
  
  set +o pipefail
  zcat HCC1395_normal_S1_L001_R1_001.fastq.gz | head -n 400 | \
  sentieon bwa mem \
      -R "@RG\tID:test_sample_1\tSM:test_sample_1\tPL:ILLUMINA" \
      -t 8 \
      human_g1k_v37_decoy.fasta \
      - | \
  sentieon util sort \
      -r human_g1k_v37_decoy.fasta \
      -o test_sample_1_sorted.bam \
      -t 8 \
      --sam2bam -i -
  set -o pipefail
  
  sentieon driver \
      -r human_g1k_v37_decoy.fasta \
      -t 8 \
      -i test_sample_1_sorted.bam \
      --algo QualDistribution test_sample_1_qd_metrics.txt \
      --algo MeanQualityByCycle test_sample_1_mq_metrics.txt
  
  echo "Sentieon alignment and QC completed for test_sample_1"

Command exit status:
  1

Command output:
  (empty)

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/1d16662c912aa292b54a1ee330286f

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/nextflow-pipeline-template/sentieon:20caf9e-6e98e674

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line