succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 6s 4s 0s 1s 0 bytes 67% 70.9 KB 1.3 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 20s 19s 0s 0s 14.4 MB 103% 2.0 MB 950 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_csY-N1-BDNA-1_A23FG3YLT4_1) 2m 10s 4s - - 9.4 MB 90% 5.3 MB 110.7 KB 4.9 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_csY-T1-TDNA-1_A23FG3YLT4_1) 5m 22s 4s - - 14.2 MB 121% 6.0 MB 111.9 KB 5.6 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_csY-T1-TDNA-1_A23FG3YLT4_1_vs_659_csY-N1-BDNA-1_A23FG3YLT4_1) 7s 5s 0s 1s 13.4 MB 100% 8.0 MB 422.6 KB 0 bytes 432.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_CALL (659_csY-T1-TDNA-1_A23FG3YLT4_1_vs_659_csY-N1-BDNA-1_A23FG3YLT4_1) 18m 15s 4s 13m 19s 4m 51s 1.9 GB 1283% 567.2 GB 175.6 MB 185.4 GB 194.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_SCORE (659_csY-T1-TDNA-1_A23FG3YLT4_1_vs_659_csY-N1-BDNA-1_A23FG3YLT4_1) 12s 5s 3s 3s 204.6 MB 753% 186.5 MB 441.8 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_csY-N1-BDNA-1_A23FG3YLT4_1) 40s 38s 0s 1s 13.0 MB 115% 4.8 MB 448 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_csY-T1-TDNA-1_A23FG3YLT4_1) 40s 38s 0s 1s 13.2 MB 135% 5.5 MB 447 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv) 25s 22s 0s 2s 17.3 MB 114% 1.7 MB 474 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (659_csY-T1-TDNA-1_A23FG3YLT4_1_vs_659_csY-N1-BDNA-1_A23FG3YLT4_1;manta_fusion) 7s 6s - - 20.8 MB 3284% 167.1 KB 3.6 KB 0 bytes 8.0 KB 1
11 items found