.command.sh - Workdir - NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (1173_F0Y-T1-TDNA-01_B23TYFCLT4_1_vs_1173_F0Y-N1-BDNA-01_B23MHTGLT4_1;manta_fusion)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/5fc6bbefa0d897211f2f6a70e7e3ef/.command.sh
Size: 516 bytes
Task: NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (1173_F0Y-T1-TDNA-01_B23TYFCLT4_1_vs_1173_F0Y-N1-BDNA-01_B23MHTGLT4_1;manta_fusion)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bcftools stats \
     \
     \
     \
     \
     \
     \
    1173_F0Y-T1-TDNA-01_B23TYFCLT4_1_vs_1173_F0Y-N1-BDNA-01_B23MHTGLT4_1.manta_fusion.somatic_sv.scored.vcf.gz > 1173_F0Y-T1-TDNA-01_B23TYFCLT4_1_vs_1173_F0Y-N1-BDNA-01_B23MHTGLT4_1.manta_fusion.somatic_sv.scored.bcftools_stats.txt

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS":
    bcftools: $(bcftools --version 2>&1 | head -n1 | sed 's/^.*bcftools //; s/ .*$//')
END_VERSIONS