File Info
- Filename
- 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion.fusion_calls.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_sv_dev/fusion_v2_220samples_90a6e5e8-0605-1411__90a6e5e8--20260605-141149/variant_calling/manta_fusion/659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1/659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion.fusion_calls.tsv
- Size
- 2.6 KB
- Workflow Run
- fusion_v2_220samples_90a6e5e8-0605-1411
- Published
- Jun 05, 2026 9:28 AM
Content
View in new tab| specimen | gene1 | gene2 | chr1 | pos1 | chr2 | pos2 | sv_type | event_id | score | filter_call | pon_bp1_count | pon_bp2_count | pon_pair_count | cosmic_hit | somaticscore | manual_vaf | is_pass | is_interchrom | is_paralog_of_higher_score_call |
| 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion | DDX10 | PKNOX2 | chr11 | 108723165 | chr11 | 125372651 | DEL | MantaDEL:0:174740:174741:0:0:0 | 0.9999941798510644 | PASS | 0 | 0 | 0 | 0 | 199.0 | 0.17391304347826086 | 1 | 0 | 0 |
| 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion | EWSR1 | FLI1 | chr22 | 29290311 | chr11 | 128776011 | BND | MantaBND:0:94657:248280:0:0:0:0 | 0.9999862994961964 | PASS | 2 | 0 | 0 | 1 | 1402.0 | 0.18373367045933417 | 1 | 1 | 0 |
| 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion | GRIA4 | LAYN | chr11 | 105649183 | chr11 | 111555216 | DEL | MantaDEL:0:174800:174801:0:0:0 | 0.9997668286887653 | PASS | 0 | 0 | 0 | 0 | 88.0 | 0.09735744089012517 | 1 | 0 | 0 |
| 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion | FOXRED1 | . | chr11 | 126275357 | chr11 | 104900342 | DEL | MantaDEL:0:25083:174524:0:0:0 | 0.9989861106831632 | PASS | 0 | 0 | 0 | 0 | 200.0 | 0.3024390243902439 | 1 | 0 | 0 |
| 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion | EWSR1 | . | chr22 | 29291588 | chr11 | 128827180 | BND | MantaBND:0:94657:247554:0:0:0:1 | 0.9964556209522112 | PASS | 3 | 0 | 0 | 0 | 711.0 | 0.08651614264612788 | 1 | 1 | 0 |
| 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion | HLA-A | HLA-B | chr6 | 29943021 | chr6 | 31356796 | BND | MantaBND:0:113976:114000:3:0:0:1 | 0.9949221229064877 | PASS | 47 | 13 | 0 | 0 | 52.0 | 0.020833333333333332 | 1 | 0 | 0 |
| 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion | OR1L4 | OR1L6 | chr9 | 122724819 | chr9 | 122750760 | DEL | MantaDEL:0:155569:155795:1:0:0 | 0.986066506549134 | PASS | 10 | 56 | 0 | 0 | 39.0 | 0.02527646129541864 | 1 | 0 | 0 |
| 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion | CDK9 | . | chr9 | 127789906 | chr20 | 23925385 | BND | MantaBND:0:81745:156335:0:4:0:1 | 0.03881321120768009 | FAIL | 7 | 0 | 0 | 0 | 36.0 | 0.000899415380002998 | 1 | 1 | 0 |
| 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion | HLA-B | HLA-C | chr6 | 31355210 | chr6 | 31269884 | DUP | MantaDUP:TANDEM:0:113982:114308:4:0:0 | 0.01312328555685086 | FAIL | 50 | 0 | 0 | 0 | 50.0 | 0.07453416149068323 | 1 | 0 | 0 |
| 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion | LRRC4C | TENT5C | chr11 | 40828111 | chr1 | 117626799 | BND | MantaBND:0:10268:11022:0:0:0:1 | 2.8786596233241664e-05 | FAIL | 0 | 9 | 0 | 0 | 31.0 | 0.002226720647773279 | 1 | 1 | 0 |
| 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion | E2F3 | . | chr6 | 20493513 | chr4 | 111442944 | BND | MantaBND:0:22026:112958:0:2:0:0 | 7.146976800272431e-06 | FAIL | 2 | 0 | 0 | 0 | 37.0 | 0.0020168067226890756 | 1 | 1 | 0 |
12 rows