specimen gene1 gene2 chr1 pos1 chr2 pos2 sv_type event_id score filter_call pon_bp1_count pon_bp2_count pon_pair_count cosmic_hit somaticscore manual_vaf is_pass is_interchrom is_paralog_of_higher_score_call 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion DDX10 PKNOX2 chr11 108723165 chr11 125372651 DEL MantaDEL:0:174740:174741:0:0:0 0.9999941798510644 PASS 0 0 0 0 199.0 0.17391304347826086 1 0 0 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion EWSR1 FLI1 chr22 29290311 chr11 128776011 BND MantaBND:0:94657:248280:0:0:0:0 0.9999862994961964 PASS 2 0 0 1 1402.0 0.18373367045933417 1 1 0 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion GRIA4 LAYN chr11 105649183 chr11 111555216 DEL MantaDEL:0:174800:174801:0:0:0 0.9997668286887653 PASS 0 0 0 0 88.0 0.09735744089012517 1 0 0 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion FOXRED1 . chr11 126275357 chr11 104900342 DEL MantaDEL:0:25083:174524:0:0:0 0.9989861106831632 PASS 0 0 0 0 200.0 0.3024390243902439 1 0 0 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion EWSR1 . chr22 29291588 chr11 128827180 BND MantaBND:0:94657:247554:0:0:0:1 0.9964556209522112 PASS 3 0 0 0 711.0 0.08651614264612788 1 1 0 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion HLA-A HLA-B chr6 29943021 chr6 31356796 BND MantaBND:0:113976:114000:3:0:0:1 0.9949221229064877 PASS 47 13 0 0 52.0 0.020833333333333332 1 0 0 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion OR1L4 OR1L6 chr9 122724819 chr9 122750760 DEL MantaDEL:0:155569:155795:1:0:0 0.986066506549134 PASS 10 56 0 0 39.0 0.02527646129541864 1 0 0 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion CDK9 . chr9 127789906 chr20 23925385 BND MantaBND:0:81745:156335:0:4:0:1 0.03881321120768009 FAIL 7 0 0 0 36.0 0.000899415380002998 1 1 0 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion HLA-B HLA-C chr6 31355210 chr6 31269884 DUP MantaDUP:TANDEM:0:113982:114308:4:0:0 0.01312328555685086 FAIL 50 0 0 0 50.0 0.07453416149068323 1 0 0 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion LRRC4C TENT5C chr11 40828111 chr1 117626799 BND MantaBND:0:10268:11022:0:0:0:1 2.8786596233241664e-05 FAIL 0 9 0 0 31.0 0.002226720647773279 1 1 0 659_exZ-T1-TDNA-1_A23TNVHLT4_1_vs_659_exZ-N1-BDNA-1_A23TNVNLT4_1.manta_fusion E2F3 . chr6 20493513 chr4 111442944 BND MantaBND:0:22026:112958:0:2:0:0 7.146976800272431e-06 FAIL 2 0 0 0 37.0 0.0020168067226890756 1 1 0