specimen gene1 gene2 chr1 pos1 chr2 pos2 sv_type event_id score filter_call pon_bp1_count pon_bp2_count pon_pair_count cosmic_hit somaticscore manual_vaf is_pass is_interchrom is_paralog_of_higher_score_call 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion RYR3 SPRED1 chr15 33516188 chr15 38264269 BND MantaBND:82099:1:2:0:0:0:1 0.9995058528507357 PASS 0 0 0 0 48.0 0.01650943396226415 1 0 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion MSRA TNKS chr8 10303724 chr8 9726716 DEL MantaDEL:151134:3:5:0:0:0 0.9778192029912587 PASS 0 0 0 0 36.0 0.019230769230769232 1 0 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion WDR1 . chr4 10077804 chr4 9756644 BND MantaBND:86779:0:1:0:0:0:1 0.25272151099684176 PASS 0 0 0 0 35.0 0.031141868512110725 1 0 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion FBXW7 . chr4 152535420 chr8 122610790 BND MantaBND:2:152649:152650:0:2:0:0 0.008586647886062235 FAIL 95 0 0 0 63.0 0.024691358024691357 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion FBXO11 . chr2 47806818 chr1 104946748 BND MantaBND:2:37980:62804:0:2:0:1 0.007570027666938289 FAIL 8 0 0 0 71.0 0.02176696542893726 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion TP63 . chr3 189705282 chr16 54552652 BND MantaBND:84892:1:2:0:0:0:0 0.004393565070623273 FAIL 0 0 0 0 31.0 0.018145161290322582 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion AGAP1 PAPSS1 chr2 235740993 chr4 107649735 BND MantaBND:63681:0:1:0:0:0:1 0.0037334672132849924 FAIL 0 0 0 0 34.0 0.022670025188916875 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion UBE2A . chrX 119583113 chr2 157365631 BND MantaBND:2:398754:398778:0:0:0:1 0.003297574585456563 FAIL 2 0 0 0 45.0 0.03103448275862069 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion NPM1 . chr5 171392863 chr19 28287635 BND MantaBND:2:176560:176591:0:2:0:1 0.002481500993065264 FAIL 2 0 0 0 46.0 0.013138686131386862 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion ADAD1 . chr4 122429705 chr4 122429829 BND MantaBND:45138:1:1:1:0:0:1 0.00248069263958197 FAIL 0 0 0 0 30.0 0.026595744680851064 1 0 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion CRPPA PAK5 chr7 16435410 chr20 9711390 BND MantaBND:2:378435:378609:0:0:0:1 0.0024535109162569847 FAIL 0 0 0 0 89.0 0.020432692307692308 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion IDH2 . chr15 90083086 chr10 34832581 BND MantaBND:2:177195:281260:0:3:0:0 0.0016095396825223757 FAIL 214 0 0 0 47.0 0.011804384485666104 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion PPARG . chr3 12298403 chr9 108280471 BND MantaBND:2:8138:255851:0:2:0:0 0.0012190172431698438 FAIL 7 0 0 0 50.0 0.0676818950930626 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion NF2 PRPF18 chr22 29666127 chr10 13663097 BND MantaBND:2:78245:260321:0:0:0:0 0.0010511744440706652 FAIL 0 0 0 0 40.0 0.020066889632107024 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion ATXN7 TCERG1L chr3 64002478 chr10 131139711 BND MantaBND:2:9558:56762:0:0:0:0 0.0006828967387806447 FAIL 12 0 0 0 81.0 0.010340632603406326 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion ETV6 . chr12 11799740 chr7 34157994 BND MantaBND:2:24955:155145:0:2:0:1 0.000510841323139313 FAIL 0 0 0 0 57.0 0.009942004971002486 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion IGFBPL1 SLC35F3 chr9 38414120 chr1 234066984 BND MantaBND:2:3102:49448:0:5:0:1 0.0004869545208750575 FAIL 0 0 0 0 39.0 0.009109311740890687 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion IGF1R SMYD3 chr15 98959984 chr1 245771068 BND MantaBND:2:7546:51457:0:4:0:0 0.00038143021982376665 FAIL 18 0 0 0 236.0 0.2874015748031496 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion NUCKS1 PPP2R5A chr1 205739923 chr1 212358751 DUP MantaDUP:TANDEM:29305:0:1:0:0:0 0.0002522957954665084 FAIL 0 0 0 0 38.0 0.02278481012658228 1 0 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion PPP1R12B ZNF66 chr1 202434715 chr19 20783395 BND MantaBND:28818:1:2:0:0:0:0 0.00021997439078812376 FAIL 0 0 0 0 31.0 0.01565217391304348 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion PPARG . chr3 12298403 chr20 22937260 BND MantaBND:2:8138:22553:0:3:0:1 0.00019673626541818727 FAIL 7 0 0 0 55.0 0.07008547008547009 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion IGF1R . chr15 98959990 chr16 59273350 BND MantaBND:2:7546:8432:0:6:0:0 0.0001501564258203122 FAIL 18 0 0 0 36.0 0.20334928229665072 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion FGFR2 . chr10 121590471 chr16 30801296 BND MantaBND:2:13863:271979:0:1:0:0 0.0001287843241175465 FAIL 2 0 0 0 54.0 0.011695906432748537 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion PBX1 . chr1 164563270 chr20 18974036 BND MantaBND:23080:2:3:0:0:0:1 0.0001278582826079188 FAIL 0 0 0 0 34.0 0.01615798922800718 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion CMC1 PALS2 chr3 28294466 chr7 24635817 BND MantaBND:67063:1:2:0:0:0:0 0.00012342452191106983 FAIL 0 0 0 0 37.0 0.03488372093023256 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion RHPN2 TCF7L2 chr19 33043163 chr10 112950393 BND MantaBND:2:270823:270824:0:1:0:1 0.00011604203016211225 FAIL 0 15 0 0 30.0 0.00344149459193707 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion CACNB4 ETV1 chr2 152018807 chr7 13978416 BND MantaBND:2:6225:83259:0:9:0:1 9.80221958672856e-05 FAIL 0 116 0 0 110.0 0.05078416728902166 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion PPARG . chr3 12298403 chr14 75491154 BND MantaBND:2:8138:94583:0:2:0:1 9.727555066940525e-05 FAIL 7 0 0 0 51.0 0.0702054794520548 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion SETD2 . chr3 47101634 chr5 136466498 BND MantaBND:2:329:45470:0:5:0:1 8.506918257541797e-05 FAIL 1156 0 0 0 68.0 0.03566009104704097 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion NRG1 TTLL6 chr8 32732739 chr17 48810974 BND MantaBND:2:58010:228052:0:0:0:0 8.343851959504982e-05 FAIL 27 0 0 0 47.0 0.018789144050104383 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion COQ6 . chr14 73950207 chr19 3986845 BND MantaBND:210801:0:1:0:0:0:0 8.010846880217979e-05 FAIL 0 0 0 0 37.0 0.024456521739130436 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion SETD2 . chr3 47101634 chr6 113664029 BND MantaBND:2:329:109894:0:6:0:1 7.515257640167303e-05 FAIL 1156 0 0 0 82.0 0.0340826686004351 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion ARMC9 SETD2 chr2 231372700 chr3 47101633 BND MantaBND:2:329:100718:0:6:0:1 6.746972998917531e-05 FAIL 0 1156 0 0 95.0 0.06952965235173825 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion ARID1B . chr6 157208894 chr3 196441654 BND MantaBND:2:129526:197790:0:4:0:1 4.251978873853981e-05 FAIL 0 0 0 0 44.0 0.013262599469496022 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion IGF1 . chr12 102398343 chr4 179322284 BND MantaBND:2:2296:304061:0:2:0:0 3.413380498085278e-05 FAIL 3 0 0 0 63.0 0.011135857461024499 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion SETD2 SRGAP3 chr3 47101634 chr3 9286162 BND MantaBND:2:329:101713:0:6:0:1 2.9218915246961682e-05 FAIL 1156 0 0 0 58.0 0.03650190114068441 1 0 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion SYNE4 . chr19 36006517 chr12 88261374 BND MantaBND:196987:0:1:0:0:0:1 2.6962100897523935e-05 FAIL 0 0 0 0 41.0 0.08333333333333333 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion SETD2 . chr3 47101633 chr11 80724400 BND MantaBND:2:329:26977:0:6:0:1 2.4602773809841872e-05 FAIL 1156 0 0 0 66.0 0.035258814703675916 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion CNTNAP5 SETD2 chr2 124709217 chr3 47101633 BND MantaBND:2:329:75629:0:5:0:0 2.0297579225153093e-05 FAIL 0 1156 0 0 51.0 0.03543913713405239 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion PDGFRA ZHX2 chr4 54269534 chr8 122887094 BND MantaBND:2:5226:61092:0:5:0:1 1.868051272331002e-05 FAIL 1277 0 0 0 55.0 0.016068559185859668 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion PPARG . chr3 12366543 chr6 156033622 BND MantaBND:2:103709:104205:0:0:0:1 1.496756255524733e-05 FAIL 2 0 0 0 41.0 0.00946372239747634 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion HNRNPK . chr9 83968200 chr9 83968080 BND MantaBND:2:250211:250211:20:2:0:0 1.1129506704357912e-05 FAIL 0 4 0 0 31.0 0.0070921985815602835 1 0 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion ETV1 MAOA chr7 13978418 chrX 43657121 BND MantaBND:2:6225:152862:0:5:0:0 9.118659479476196e-06 FAIL 116 0 0 0 130.0 0.04828551434569629 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion ETV1 . chr7 13978418 chr3 71985863 BND MantaBND:2:6225:114638:0:9:0:1 5.931360160396857e-06 FAIL 116 0 0 0 106.0 0.04835318850735809 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion PDGFRA . chr4 54269534 chrX 39680971 BND MantaBND:2:5226:139272:0:3:0:0 3.006447094310461e-06 FAIL 1277 0 0 0 36.0 0.014892443463872035 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion ETV6 . chr12 11895310 chr5 134513056 BND MantaBND:2:179379:292007:0:3:0:0 2.592668789127989e-06 FAIL 5 0 0 0 56.0 0.04891304347826087 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion PDGFRA SALL4 chr4 54269535 chr20 51788358 BND MantaBND:2:5226:139305:0:3:0:0 2.1722181174757014e-06 FAIL 1277 0 0 0 35.0 0.01579520697167756 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion ETV6 NCOA3 chr12 11827171 chr20 47531933 BND MantaBND:2:1866:382650:0:3:0:0 2.131183977802855e-06 FAIL 1261 0 0 0 49.0 0.00631578947368421 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion HDAC9 PDGFRA chr7 18422745 chr4 54269535 BND MantaBND:2:5226:38829:0:4:0:0 2.1270543716412227e-06 FAIL 0 1277 0 0 34.0 0.015991471215351813 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion AR PTPRT chrX 67695847 chr20 42345586 BND MantaBND:2:8798:38029:0:8:0:0 1.5907897990274166e-06 FAIL 92 0 0 0 43.0 0.048726467331118496 1 1 0 659_dcz-T1-TDNA-1_B23MCVGLT4_1_vs_659_dcz-N1-BDNA-1_B23KFG5LT4_1.manta_fusion JARID2 PDGFRA chr6 15300723 chr4 54269535 BND MantaBND:2:5226:106905:0:3:0:1 1.258985025141208e-06 FAIL 0 1277 0 0 35.0 0.015275504637206765 1 1 0