specimen gene1 gene2 chr1 pos1 chr2 pos2 sv_type event_id score filter_call pon_bp1_count pon_bp2_count pon_pair_count cosmic_hit somaticscore manual_vaf is_pass is_interchrom is_paralog_of_higher_score_call 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion P2RY1 . chr3 152836866 chr3 154008788 DUP MantaDUP:TANDEM:1:240283:240288:0:0:0 0.07924656685439843 PASS 0 0 0 0 35.0 0.02158273381294964 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion TMEM132D UBR1 chr12 129508919 chr15 42998265 BND MantaBND:200679:1:2:0:0:0:1 0.05906786278654186 PASS 0 0 0 0 32.0 0.02088167053364269 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion FAT4 . chr4 125451538 chr4 188128722 BND MantaBND:1:53862:294162:0:0:0:0 0.015632638260568127 FAIL 0 0 0 0 30.0 0.017716535433070866 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion ADGRL4 . chr1 78893133 chr4 72893216 BND MantaBND:1:28333:28343:0:0:0:1 0.013660348584840633 FAIL 0 0 0 0 38.0 0.01834862385321101 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion EPYC OTOGL chr12 91004235 chr12 80336485 DEL MantaDEL:1:716871:716877:0:0:0 0.010107351266695092 FAIL 0 0 0 0 35.0 0.02452316076294278 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion BIRC6 . chr2 32493610 chr2 35217223 BND MantaBND:1:109057:109060:0:0:0:0 0.008299918476703156 FAIL 0 0 0 0 39.0 0.03169014084507042 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion OR4C15 . chr11 55554329 chr11 55554187 BND MantaBND:206835:0:1:0:0:0:1 0.0075923275789967016 FAIL 0 0 0 0 42.0 0.10227272727272728 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion TRIM9 . chr14 51025265 chr10 97725053 BND MantaBND:1:910611:910612:0:3:0:0 0.0065600199497927204 FAIL 0 0 0 0 33.0 0.02284263959390863 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion ANKRD44 GTF3C3 chr2 197026920 chr2 196780594 DUP MantaDUP:TANDEM:23978:1:2:0:0:0 0.005405000502419574 FAIL 0 0 0 0 30.0 0.018442622950819672 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion ULBP1 . chr6 149969303 chr6 150301152 BND MantaBND:1:431932:432072:0:0:0:1 0.004501772183842744 FAIL 0 0 0 0 38.0 0.0297029702970297 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion CNTNAP2 PAK6 chr7 146976588 chr15 40272343 BND MantaBND:174325:0:1:0:0:0:0 0.003928664480482356 FAIL 0 0 0 0 41.0 0.030201342281879196 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion ALMS1 EIF1AY chr2 73596762 chrY 20589513 BND MantaBND:57825:0:1:0:0:0:0 0.003169480403687938 FAIL 0 0 0 0 43.0 0.06206896551724138 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion PDE8A . chr15 85115459 chr15 85166995 DEL MantaDEL:1:821727:821735:0:0:0 0.0019134084011592585 FAIL 0 0 0 0 33.0 0.034482758620689655 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion ARHGAP19-SLIT1 EPM2AIP1 chr10 97210252 chr3 36988241 BND MantaBND:1:202669:202688:0:0:0:1 0.0007867439287954332 FAIL 0 0 0 0 44.0 0.03515625 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion NAE1 . chr16 66823592 chr7 31389346 BND MantaBND:1:740920:845887:0:0:0:1 0.0007839562778477619 FAIL 0 0 0 0 43.0 0.038135593220338986 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion HLA-DPB1 . chr6 33086577 chr6_GL000251v2_alt 4498488 BND MantaBND:1:100747:390552:17:0:0:0 0.0005298159643508947 FAIL 51 0 0 0 479.0 0.8518518518518519 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion CFAP47 . chrX 36099758 chrX 4758548 BND MantaBND:247950:0:1:0:0:0:1 0.0002732121503831589 FAIL 0 0 0 0 34.0 0.09333333333333334 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion ATRX MAGT1 chrX 77562348 chrX 77871176 BND MantaBND:1:975305:1010765:0:0:0:0 0.00023546685013538796 FAIL 0 0 0 0 42.0 0.03862660944206009 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion CENPK . chr5 65554898 chr15 65221682 BND MantaBND:1:332342:332347:0:0:0:0 0.00014356805634131733 FAIL 0 0 0 0 39.0 0.03272727272727273 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion BCL2 INTS6L chr18 63128464 chrX 135575826 BND MantaBND:1:14620:65495:0:0:0:1 0.0001263956072519358 FAIL 2 0 0 0 110.0 0.03335919317300233 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion KIF15 . chr3 44784860 chr4 43710641 BND MantaBND:85746:1:5:0:0:0:0 0.00012016808000837658 FAIL 0 0 0 0 38.0 0.049586776859504134 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion C14orf39 RTL4 chr14 60468466 chrX 112361585 BND MantaBND:217406:1:3:0:1:0:1 9.066428475561637e-05 FAIL 0 0 0 0 30.0 0.07142857142857142 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion FAM120AOS . chr9 93447654 chr2 62588461 BND MantaBND:1:560936:560942:0:0:0:1 7.476778822539364e-05 FAIL 0 0 0 0 31.0 0.02643171806167401 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion FBXW7 SMCO4 chr4 152322262 chr11 93504909 BND MantaBND:1:300269:300559:0:7:0:0 6.701162415414282e-05 FAIL 98 0 0 0 36.0 0.009433962264150943 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion CFAP47 DMD chrX 36160693 chrX 31952382 BND MantaBND:1:1004185:1004186:0:0:0:1 5.273643983077913e-05 FAIL 0 0 0 0 33.0 0.0297029702970297 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion LHFPL3 NHLRC2 chr7 104490092 chr10 113858627 BND MantaBND:1:611998:613402:0:0:0:0 5.224528086387296e-05 FAIL 0 0 0 0 36.0 0.024128686327077747 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion NOTCH3 . chr19 15187467 chr6 168405008 BND MantaBND:1:930774:930788:0:1:0:1 3.627621892755541e-05 FAIL 17 0 0 0 78.0 0.020224719101123594 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion GALC . chr14 87950665 chr14 82137554 BND MantaBND:228021:0:1:0:0:0:0 3.325769804874507e-05 FAIL 0 0 0 0 32.0 0.03125 1 0 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion ATP8B3 LPP chr19 1795897 chr3 188664666 BND MantaBND:1:5587:256394:0:4:0:0 2.5624227191286153e-05 FAIL 0 0 0 0 30.0 0.006644518272425249 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion BCL2 . chr18 63128464 chr3 18481927 BND MantaBND:1:14620:98842:0:0:0:1 1.8025727703435997e-05 FAIL 2 0 0 0 111.0 0.030626780626780627 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion FANCB TP63 chrX 14850604 chr3 189699098 BND MantaBND:65094:1:5:0:0:0:0 1.1345923726743581e-05 FAIL 0 0 0 0 33.0 0.044444444444444446 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion EGFR ZC3H12C chr7 55205003 chr11 110125297 BND MantaBND:1:10538:245712:0:5:0:1 9.231643121703013e-06 FAIL 0 0 0 0 42.0 0.06191369606003752 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion BCL2 TMTC2 chr18 63128464 chr12 83055744 BND MantaBND:1:14620:95282:0:0:0:1 7.464924025012183e-06 FAIL 2 0 0 0 93.0 0.030868628858578606 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion BCL2 SGCD chr18 63128464 chr5 156287669 BND MantaBND:1:14620:317161:0:0:0:1 7.310431920309692e-06 FAIL 2 0 0 0 93.0 0.030758226037195996 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion BCL2 . chr18 63128464 chr16 63257970 BND MantaBND:1:14620:172552:0:0:0:1 7.214093032326456e-06 FAIL 2 0 0 0 92.0 0.03076923076923077 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion BMX ETNK1 chrX 15511484 chr12 22673039 BND MantaBND:1:46586:689228:0:0:0:1 7.158513398768264e-06 FAIL 0 0 0 0 32.0 0.0297029702970297 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion BCL2 FRMPD3 chr18 63128464 chrX 107531112 BND MantaBND:1:14620:245890:0:0:0:0 5.416146921311643e-06 FAIL 2 0 0 0 93.0 0.0301941049604601 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion BCL2 . chr18 63128464 chr3 109753329 BND MantaBND:1:14620:20482:0:0:0:1 2.0336658356482423e-06 FAIL 2 0 0 0 105.0 0.03125 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion DOCK5 NTRK3 chr8 25391198 chr15 88059051 BND MantaBND:1:5703:405075:0:8:0:1 1.9876114554046158e-06 FAIL 0 1484 0 0 38.0 0.05617352614015573 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion MYB . chr6 135206780 chr12 105998681 BND MantaBND:1:419656:424969:0:0:0:1 1.9030244648283525e-06 FAIL 3 0 0 0 35.0 0.024390243902439025 1 1 0 659_ehU-T1-TDNA-1_A23TNVYLT4_1_vs_659_ehU-N1-BDNA-1_A23TY32LT4_1.manta_fusion IGF1 KDM5A chr12 102402395 chr12 352185 BND MantaBND:1:668897:669041:0:0:0:0 1.1354575618861316e-06 FAIL 6 0 0 0 34.0 0.005917159763313609 1 0 0