.command.sh - Workdir - NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (659_dKV-T1-TDNA-1_A23TNVYLT4_1_vs_659_dKV-N1-BDNA-1_A23TY32LT4_1;manta_fusion)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/bd4e0d9faf5ad1475b4d88b55c2b9c/.command.sh
Size: 508 bytes
Task: NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (659_dKV-T1-TDNA-1_A23TNVYLT4_1_vs_659_dKV-N1-BDNA-1_A23TY32LT4_1;manta_fusion)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bcftools stats \
     \
     \
     \
     \
     \
     \
    659_dKV-T1-TDNA-1_A23TNVYLT4_1_vs_659_dKV-N1-BDNA-1_A23TY32LT4_1.manta_fusion.somatic_sv.scored.vcf.gz > 659_dKV-T1-TDNA-1_A23TNVYLT4_1_vs_659_dKV-N1-BDNA-1_A23TY32LT4_1.manta_fusion.somatic_sv.scored.bcftools_stats.txt

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS":
    bcftools: $(bcftools --version 2>&1 | head -n1 | sed 's/^.*bcftools //; s/ .*$//')
END_VERSIONS