Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/22553196063551c2cd09ac608e2502/1173_H2E-T1-TDNA-01_B23KCGWLT4_1_vs_1173_H2E-N1-BDNA-01_B23MHTGLT4_1.manta_fusion.somatic_sv.vcf.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/MantaFusion/foresight_panel_for_manta.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/b97bf6759b0e1e3456e4f30a5d71d4/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/MantaFusion/protein_coding_genes.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/b97bf6759b0e1e3456e4f30a5d71d4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/22553196063551c2cd09ac608e2502/1173_H2E-T1-TDNA-01_B23KCGWLT4_1_vs_1173_H2E-N1-BDNA-01_B23MHTGLT4_1.manta_fusion.somatic_sv.vcf.gz
==> STAGING COMPLETE (6 inputs)

[annotateFusionVcf] Loading gene BED: protein_coding_genes.bed
[annotateFusionVcf] Loading actionable BED: foresight_panel_for_manta.bed
[annotateFusionVcf] Annotating VCF...
[annotateFusionVcf] WARNING: could not identify tumor sample by name (['1173_H2E-N1-BDNA-01_B23MHTGLT4_1', '1173_H2E-T1-TDNA-01_B23KCGWLT4_1']) — falling back to positional heuristic (column 1). FUSION_TUMOR_VAF / FUSION_NORMAL_VAF may be incorrect.
[annotateFusionVcf] Done.