File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/90695d502bdafd18ae07c8d7a7f0db/.command.err
Size
453 bytes
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (1173_LAF-T1-TDNA-01_B23KCGWLT4_1_vs_1173_LAF-N1-BDNA-01_B23MHTGLT4_1)
Attempt

Content

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[annotateFusionVcf] Loading gene BED: protein_coding_genes.bed
[annotateFusionVcf] Loading actionable BED: foresight_panel_for_manta.bed
[annotateFusionVcf] Annotating VCF...
[annotateFusionVcf] WARNING: could not identify tumor sample by name (['1173_LAF-N1-BDNA-01_B23MHTGLT4_1', '1173_LAF-T1-TDNA-01_B23KCGWLT4_1']) — falling back to positional heuristic (column 1). FUSION_TUMOR_VAF / FUSION_NORMAL_VAF may be incorrect.
[annotateFusionVcf] Done.