|
succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
4s |
3s |
0s |
0s |
0 bytes |
84% |
128.0 KB |
3.2 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
|
29s |
27s |
0s |
1s |
15.2 MB |
107% |
2.0 MB |
1.6 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
2m 0s |
3s |
- |
- |
16.4 MB |
103% |
5.3 MB |
110.7 KB |
5.0 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
2m 38s |
4s |
1s |
2m 33s |
13.8 MB |
102% |
5.4 MB |
110.4 KB |
5.1 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_gK-N1-BDNA-1_B23KFG5LT4_1)
|
2m 29s |
4s |
- |
- |
16.8 MB |
102% |
5.3 MB |
111.0 KB |
5.1 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_csY-T1-TDNA-1_A23FG3YLT4_1)
|
5m 11s |
4s |
- |
- |
17.2 MB |
94% |
6.0 MB |
111.9 KB |
5.7 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_eHw-T1-TDNA-1_B23MCVGLT4_1)
|
8m 47s |
4s |
- |
- |
14.6 MB |
106% |
6.4 MB |
111.7 KB |
6.1 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_gK-T1-TDNA-1_A23MCTVLT4_1)
|
8m 47s |
3s |
- |
- |
15.9 MB |
99% |
6.4 MB |
112.3 KB |
6.1 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_csY-T1-TDNA-1_A23FG3YLT4_1_vs_659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
6s |
4s |
0s |
1s |
13.6 MB |
100% |
8.0 MB |
422.6 KB |
0 bytes |
432.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_eHw-T1-TDNA-1_B23MCVGLT4_1_vs_659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
7s |
5s |
0s |
1s |
13.7 MB |
98% |
7.8 MB |
228.6 KB |
0 bytes |
236.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_gK-T1-TDNA-1_A23MCTVLT4_1_vs_659_gK-N1-BDNA-1_B23KFG5LT4_1)
|
5s |
3s |
0s |
1s |
13.0 MB |
100% |
7.8 MB |
224.7 KB |
0 bytes |
232.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_CALL (659_csY-T1-TDNA-1_A23FG3YLT4_1_vs_659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
19m 54s |
4s |
14m 19s |
5m 30s |
1.9 GB |
1278% |
567.2 GB |
175.8 MB |
166.4 GB |
195.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_CALL (659_eHw-T1-TDNA-1_B23MCVGLT4_1_vs_659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
36m 16s |
4s |
27m 19s |
8m 52s |
2.0 GB |
1345% |
1.7 TB |
169.1 MB |
239.5 GB |
190.3 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_CALL (659_gK-T1-TDNA-1_A23MCTVLT4_1_vs_659_gK-N1-BDNA-1_B23KFG5LT4_1)
|
32m 21s |
17s |
22m 50s |
9m 13s |
2.0 GB |
1309% |
1.7 TB |
169.7 MB |
279.2 GB |
190.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_SCORE (659_csY-T1-TDNA-1_A23FG3YLT4_1_vs_659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
13s |
5s |
4s |
3s |
213.1 MB |
195% |
185.8 MB |
440.7 KB |
0 bytes |
448.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_SCORE (659_eHw-T1-TDNA-1_B23MCVGLT4_1_vs_659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
16s |
7s |
4s |
4s |
213.5 MB |
325% |
185.6 MB |
237.0 KB |
0 bytes |
244.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_SCORE (659_gK-T1-TDNA-1_A23MCTVLT4_1_vs_659_gK-N1-BDNA-1_B23KFG5LT4_1)
|
12s |
4s |
3s |
4s |
201.0 MB |
352% |
185.6 MB |
233.0 KB |
0 bytes |
240.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
21s |
20s |
0s |
0s |
12.8 MB |
100% |
4.8 MB |
460 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_csY-T1-TDNA-1_A23FG3YLT4_1)
|
27s |
25s |
0s |
1s |
13.1 MB |
107% |
5.5 MB |
454 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
21s |
20s |
0s |
0s |
13.1 MB |
100% |
4.9 MB |
460 bytes |
0 bytes |
8.0 KB |
1 |