|
succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
5s |
3s |
0s |
1s |
0 bytes |
171% |
84.1 KB |
3.3 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
1m 50s |
2s |
- |
- |
3.2 MB |
91% |
5.3 MB |
110.7 KB |
5.0 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
2m 25s |
2s |
- |
- |
18.1 MB |
110% |
5.4 MB |
110.4 KB |
5.1 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_gK-N1-BDNA-1_B23KFG5LT4_1)
|
2m 21s |
1s |
- |
- |
3.2 MB |
97% |
5.3 MB |
111.0 KB |
4.7 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_csY-T1-TDNA-1_A23FG3YLT4_1)
|
4m 49s |
1s |
- |
- |
19.9 MB |
88% |
6.0 MB |
111.9 KB |
5.7 MB |
116.0 KB |
1 |
|
aborted
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_eHw-T1-TDNA-1_B23MCVGLT4_1)
|
- |
58s |
- |
- |
- |
- |
- |
- |
- |
- |
1 |
|
aborted
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_gK-T1-TDNA-1_A23MCTVLT4_1)
|
- |
57s |
- |
- |
- |
- |
- |
- |
- |
- |
1 |
|
aborted
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_CALL (659_csY-T1-TDNA-1_A23FG3YLT4_1_vs_659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
- |
59s |
- |
- |
- |
- |
- |
- |
- |
- |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
3s |
1s |
0s |
1s |
13.0 MB |
94% |
4.8 MB |
467 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_csY-T1-TDNA-1_A23FG3YLT4_1)
|
3s |
1s |
0s |
1s |
12.9 MB |
89% |
5.5 MB |
466 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
3s |
2s |
0s |
0s |
13.1 MB |
109% |
4.9 MB |
467 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_eHw-T1-TDNA-1_B23MCVGLT4_1)
|
3s |
2s |
0s |
0s |
13.1 MB |
120% |
5.9 MB |
469 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_gK-N1-BDNA-1_B23KFG5LT4_1)
|
3s |
2s |
0s |
0s |
12.8 MB |
107% |
4.9 MB |
467 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_gK-T1-TDNA-1_A23MCTVLT4_1)
|
3s |
1s |
0s |
1s |
13.1 MB |
98% |
6.0 MB |
467 bytes |
0 bytes |
8.0 KB |
1 |