.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_gK-T1-TDNA-1_A23MCTVLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2f0abb7b94fd683010d939ff34a80d/.command.log
Size: 862 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_gK-T1-TDNA-1_A23MCTVLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2f0abb7b94fd683010d939ff34a80d/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00527_0068_A23MCTVLT4__d7a6b981--20260325-072016/alignments/recalibrated/659_gK-T1-TDNA-1_A23MCTVLT4_1/659_gK-T1-TDNA-1_A23MCTVLT4_1.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/2f0abb7b94fd683010d939ff34a80d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00527_0068_A23MCTVLT4__d7a6b981--20260325-072016/alignments/recalibrated/659_gK-T1-TDNA-1_A23MCTVLT4_1/659_gK-T1-TDNA-1_A23MCTVLT4_1.recalibrated.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_gK-T1-TDNA-1_A23MCTVLT4_1.recalibrated.bam.bai