|
succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
5s |
3s |
0s |
1s |
0 bytes |
171% |
82.1 KB |
3.3 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
|
15s |
13s |
0s |
1s |
18.6 MB |
98% |
2.0 MB |
1.6 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
2m 8s |
1s |
- |
- |
3.3 MB |
93% |
5.3 MB |
110.7 KB |
5.0 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
3m 22s |
2s |
- |
- |
18.1 MB |
119% |
5.4 MB |
110.4 KB |
5.1 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (659_gK-N1-BDNA-1_B23KFG5LT4_1)
|
2m 42s |
1s |
- |
- |
18.2 MB |
119% |
5.3 MB |
111.0 KB |
5.1 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_csY-T1-TDNA-1_A23FG3YLT4_1)
|
5m 59s |
3s |
- |
- |
19.2 MB |
90% |
6.0 MB |
111.9 KB |
5.7 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_eHw-T1-TDNA-1_B23MCVGLT4_1)
|
10m 9s |
1s |
- |
- |
20.7 MB |
89% |
6.4 MB |
111.7 KB |
6.1 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (659_gK-T1-TDNA-1_A23MCTVLT4_1)
|
10m 5s |
2s |
- |
- |
20.8 MB |
110% |
6.4 MB |
112.3 KB |
6.1 MB |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_csY-T1-TDNA-1_A23FG3YLT4_1_vs_659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
4s |
2s |
0s |
1s |
17.0 MB |
98% |
7.8 MB |
190.3 KB |
0 bytes |
200.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_eHw-T1-TDNA-1_B23MCVGLT4_1_vs_659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
4s |
2s |
0s |
1s |
17.0 MB |
99% |
7.8 MB |
190.3 KB |
0 bytes |
200.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_gK-T1-TDNA-1_A23MCTVLT4_1_vs_659_gK-N1-BDNA-1_B23KFG5LT4_1)
|
7s |
5s |
0s |
1s |
17.0 MB |
99% |
7.8 MB |
190.3 KB |
0 bytes |
200.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_CALL (659_csY-T1-TDNA-1_A23FG3YLT4_1_vs_659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
10m 3s |
3s |
4m 19s |
5m 40s |
1.8 GB |
1142% |
308.0 GB |
177.7 MB |
210.9 GB |
220.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_CALL (659_eHw-T1-TDNA-1_B23MCVGLT4_1_vs_659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
15m 29s |
4s |
6m 35s |
8m 49s |
1.9 GB |
1209% |
486.1 GB |
172.3 MB |
361.3 GB |
217.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_CALL (659_gK-T1-TDNA-1_A23MCTVLT4_1_vs_659_gK-N1-BDNA-1_B23KFG5LT4_1)
|
15m 59s |
4s |
6m 35s |
9m 19s |
1.9 GB |
1218% |
500.3 GB |
172.6 MB |
388.0 GB |
217.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_SCORE (659_csY-T1-TDNA-1_A23FG3YLT4_1_vs_659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
10s |
4s |
2s |
3s |
183.1 MB |
1092% |
186.1 MB |
197.6 KB |
0 bytes |
208.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_SCORE (659_eHw-T1-TDNA-1_B23MCVGLT4_1_vs_659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
10s |
4s |
2s |
3s |
182.9 MB |
1072% |
186.1 MB |
197.6 KB |
0 bytes |
208.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_SCORE (659_gK-T1-TDNA-1_A23MCTVLT4_1_vs_659_gK-N1-BDNA-1_B23KFG5LT4_1)
|
9s |
3s |
2s |
3s |
183.1 MB |
1083% |
186.1 MB |
197.6 KB |
0 bytes |
208.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_csY-N1-BDNA-1_A23FG3YLT4_1)
|
15s |
13s |
0s |
1s |
12.8 MB |
93% |
4.8 MB |
455 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_csY-T1-TDNA-1_A23FG3YLT4_1)
|
15s |
13s |
0s |
1s |
13.1 MB |
104% |
5.5 MB |
454 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (659_eHw-N1-BDNA-1_B23KFG5LT4_1)
|
15s |
14s |
0s |
0s |
13.1 MB |
88% |
4.9 MB |
453 bytes |
0 bytes |
8.0 KB |
1 |