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succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
1m 25s |
1m 24s |
0s |
0s |
0 bytes |
98% |
138.3 KB |
40.1 KB |
0 bytes |
40.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
|
17s |
15s |
0s |
1s |
17.3 MB |
101% |
2.0 MB |
14.7 KB |
0 bytes |
16.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (1173_F0Y-T1-TDNA-01_B23TYFCLT4_1_vs_1173_F0Y-N1-BDNA-01_B23MHTGLT4_1)
|
5s |
2s |
1s |
1s |
59.1 MB |
100% |
9.1 MB |
1.4 MB |
0 bytes |
1.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_8w-T1-TDNA-1_A23TNVHLT4_1_vs_659_8w-N1-BDNA-1_A23TNVNLT4_1)
|
5s |
2s |
1s |
1s |
59.2 MB |
101% |
9.0 MB |
1.3 MB |
0 bytes |
1.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_b4v-T1-TDNA-1_A23TNVHLT4_1_vs_659_b4v-N1-BDNA-1_A23TNVNLT4_1)
|
6s |
1s |
3s |
1s |
59.3 MB |
100% |
11.7 MB |
3.8 MB |
0 bytes |
3.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_bGd-T1-TDNA-1_A23TNVHLT4_1_vs_659_bGd-N1-BDNA-1_A23TNVNLT4_1)
|
7s |
2s |
2s |
2s |
59.3 MB |
100% |
10.3 MB |
2.4 MB |
0 bytes |
2.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_bOh-T1-TDNA-1_A23VCN5LT4_1_vs_659_bOh-N1-BDNA-1_A23TNVNLT4_1)
|
3s |
1s |
0s |
1s |
13.7 MB |
103% |
8.1 MB |
477.3 KB |
0 bytes |
488.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_boM-T1-TDNA-1_A23TNVHLT4_1_vs_659_boM-N1-BDNA-1_A23TNVNLT4_1)
|
5s |
2s |
1s |
1s |
59.3 MB |
100% |
9.4 MB |
1.6 MB |
0 bytes |
1.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_bOn-T1-TDNA-1_A23TNVHLT4_1_vs_659_bOn-N1-BDNA-1_A23TNVNLT4_1)
|
6s |
2s |
2s |
1s |
59.5 MB |
100% |
10.9 MB |
3.0 MB |
0 bytes |
3.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_bqk-T1-TDNA-1_A23TNVHLT4_1_vs_659_bqk-N1-BDNA-1_A23TNVNLT4_1)
|
5s |
3s |
0s |
1s |
13.5 MB |
101% |
8.1 MB |
480.1 KB |
0 bytes |
492.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_bT3-T1-TDNA-1_A23TNVHLT4_1_vs_659_bT3-N1-BDNA-1_A23TNVNLT4_1)
|
6s |
2s |
2s |
1s |
59.4 MB |
100% |
9.6 MB |
1.8 MB |
0 bytes |
1.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_bV5-T1-TDNA-1_A23TNVHLT4_1_vs_659_bV5-N1-BDNA-1_A23TNVNLT4_1)
|
5s |
2s |
1s |
1s |
59.3 MB |
101% |
9.1 MB |
1.4 MB |
0 bytes |
1.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_bXS-T1-TDNA-1_A23VCN5LT4_1_vs_659_bXS-N1-BDNA-1_A23TNVNLT4_1)
|
4s |
2s |
0s |
1s |
16.8 MB |
101% |
8.0 MB |
401.5 KB |
0 bytes |
408.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_c8w-T1-TDNA-1_A23VCN5LT4_1_vs_659_c8w-N1-BDNA-1_A23TNVNLT4_1)
|
3s |
1s |
0s |
1s |
13.4 MB |
102% |
8.4 MB |
759.6 KB |
0 bytes |
764.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_cCD-T1-TDNA-1_A23VCN5LT4_1_vs_659_cCD-N1-BDNA-1_A23TNVNLT4_1)
|
3s |
1s |
0s |
1s |
13.5 MB |
102% |
8.4 MB |
767.5 KB |
0 bytes |
780.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_cck-T1-TDNA-1_A23TNVHLT4_1_vs_659_cck-N1-BDNA-1_A23TNVNLT4_1)
|
6s |
3s |
0s |
2s |
13.5 MB |
101% |
8.5 MB |
816.8 KB |
0 bytes |
828.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_Cc-T1-TDNA-1_A23TNVHLT4_1_vs_659_Cc-N1-BDNA-1_A23TNVNLT4_1)
|
11s |
4s |
4s |
2s |
59.2 MB |
100% |
11.7 MB |
3.8 MB |
0 bytes |
3.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_cl5-T1-TDNA-1_A23VCN5LT4_1_vs_659_cl5-N1-BDNA-1_A23TNVNLT4_1)
|
3s |
1s |
0s |
1s |
13.6 MB |
100% |
8.3 MB |
645.4 KB |
0 bytes |
656.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_cuv-T1-TDNA-1_A23VCN5LT4_1_vs_659_cuv-N1-BDNA-1_A23TNVNLT4_1)
|
3s |
1s |
0s |
1s |
14.2 MB |
102% |
8.2 MB |
552.3 KB |
0 bytes |
560.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA_FUSION:MANTA_FUSION_ANNOTATE (659_cvg-T1-TDNA-1_A23VCN5LT4_1_vs_659_cvg-N1-BDNA-1_A23TNVNLT4_1)
|
4s |
1s |
1s |
1s |
59.4 MB |
99% |
9.0 MB |
1.3 MB |
0 bytes |
1.4 MB |
1 |