File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/a8ac54f4101044abcc4cb6949a38f8/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-gszsimug because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 19:08:31,734 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 19:08:32,629 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 19:08:32,802 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 19:08:56,169 - cnv_pipe.batch.run_model - INFO - Loaded data with 93 samples
2026-06-02 19:08:56,378 - cnv_pipe.batch.run_model - INFO - Processing cluster 871 with 192 probes
2026-06-02 19:08:56,804 - cnv_pipe.batch.run_model.cluster871 - INFO - Child process started for cluster 871 with 192 probes
2026-06-02 19:12:25,903 - cnv_pipe.batch.run_model.cluster871 - INFO - Child process finished cluster 871. Wrote cluster_871_samples.csv and cluster_871_params.csv
2026-06-02 19:12:25,906 - cnv_pipe.batch.run_model - INFO - Cluster 871 finished in 209.53 seconds. Status: SUCCESS