File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/a3417acd78c9eb721e976f96b07d2e/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-z2le2htw because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 19:08:25,574 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 19:08:26,409 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 19:08:26,580 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 19:08:49,650 - cnv_pipe.batch.run_model - INFO - Loaded data with 93 samples
2026-06-02 19:08:49,745 - cnv_pipe.batch.run_model - INFO - Processing cluster 841 with 140 probes
2026-06-02 19:08:50,262 - cnv_pipe.batch.run_model.cluster841 - INFO - Child process started for cluster 841 with 140 probes
2026-06-02 19:11:43,805 - cnv_pipe.batch.run_model.cluster841 - INFO - Child process finished cluster 841. Wrote cluster_841_samples.csv and cluster_841_params.csv
2026-06-02 19:11:43,807 - cnv_pipe.batch.run_model - INFO - Cluster 841 finished in 174.06 seconds. Status: SUCCESS