File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/ebe99da5209d11f5fe2b3b1c2eea40/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-95ius4su because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 19:08:48,286 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 19:08:49,157 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 19:08:49,388 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 19:09:14,085 - cnv_pipe.batch.run_model - INFO - Loaded data with 93 samples
2026-06-02 19:09:14,316 - cnv_pipe.batch.run_model - INFO - Processing cluster 967 with 155 probes
2026-06-02 19:09:14,752 - cnv_pipe.batch.run_model.cluster967 - INFO - Child process started for cluster 967 with 155 probes
2026-06-02 19:12:15,207 - cnv_pipe.batch.run_model.cluster967 - INFO - Child process finished cluster 967. Wrote cluster_967_samples.csv and cluster_967_params.csv
2026-06-02 19:12:15,210 - cnv_pipe.batch.run_model - INFO - Cluster 967 finished in 180.89 seconds. Status: SUCCESS