Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/c4911bc2dd2d7bd48f19479b10f175/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/c4911bc2dd2d7bd48f19479b10f175/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/75aeaf41b6380bc4dbc477aee55d52/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/c4911bc2dd2d7bd48f19479b10f175/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/811ee7316b7a6386b58c548dcba2c4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/811ee7316b7a6386b58c548dcba2c4/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-729vut_f because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 19:09:10,886 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 19:09:11,838 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 19:09:12,025 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 19:09:36,944 - cnv_pipe.batch.run_model - INFO - Loaded data with 93 samples
2026-06-02 19:09:37,200 - cnv_pipe.batch.run_model - INFO - Processing cluster 1078 with 113 probes
2026-06-02 19:09:37,618 - cnv_pipe.batch.run_model.cluster1078 - INFO - Child process started for cluster 1078 with 113 probes
2026-06-02 19:12:05,588 - cnv_pipe.batch.run_model.cluster1078 - INFO - Child process finished cluster 1078. Wrote cluster_1078_samples.csv and cluster_1078_params.csv
2026-06-02 19:12:05,589 - cnv_pipe.batch.run_model - INFO - Cluster 1078 finished in 148.39 seconds. Status: SUCCESS