Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/843b442b3f4056063ad6882f8d6b2c/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/843b442b3f4056063ad6882f8d6b2c/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/713da545586dd355eb0d9e2e579513/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/843b442b3f4056063ad6882f8d6b2c/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/ec33e4bfdc0a97c4bdffb7403aa07c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/ec33e4bfdc0a97c4bdffb7403aa07c/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-d88f90lb because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:47:22,987 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:47:23,868 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:47:24,038 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:47:46,524 - cnv_pipe.batch.run_model - INFO - Loaded data with 96 samples
2026-06-02 18:47:46,601 - cnv_pipe.batch.run_model - INFO - Processing cluster 994 with 131 probes
2026-06-02 18:47:46,996 - cnv_pipe.batch.run_model.cluster994 - INFO - Child process started for cluster 994 with 131 probes
2026-06-02 18:50:27,849 - cnv_pipe.batch.run_model.cluster994 - INFO - Child process finished cluster 994. Wrote cluster_994_samples.csv and cluster_994_params.csv
2026-06-02 18:50:27,855 - cnv_pipe.batch.run_model - INFO - Cluster 994 finished in 161.25 seconds. Status: SUCCESS