File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/413d7296409334e65209c66ef55428/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-j6958llg because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:47:29,954 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:47:30,801 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:47:30,976 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:47:53,062 - cnv_pipe.batch.run_model - INFO - Loaded data with 96 samples
2026-06-02 18:47:53,255 - cnv_pipe.batch.run_model - INFO - Processing cluster 1030 with 186 probes
2026-06-02 18:47:53,646 - cnv_pipe.batch.run_model.cluster1030 - INFO - Child process started for cluster 1030 with 186 probes
2026-06-02 18:51:04,026 - cnv_pipe.batch.run_model.cluster1030 - INFO - Child process finished cluster 1030. Wrote cluster_1030_samples.csv and cluster_1030_params.csv
2026-06-02 18:51:04,029 - cnv_pipe.batch.run_model - INFO - Cluster 1030 finished in 190.77 seconds. Status: SUCCESS