File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/1ee7847dee8bbee5d3754073774d04/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-hs2ey2st because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:38:59,395 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:39:00,209 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:39:00,378 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:39:16,334 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:39:16,571 - cnv_pipe.batch.run_model - INFO - Processing cluster 881 with 190 probes
2026-06-02 18:39:16,953 - cnv_pipe.batch.run_model.cluster881 - INFO - Child process started for cluster 881 with 190 probes
2026-06-02 18:42:50,805 - cnv_pipe.batch.run_model.cluster881 - INFO - Child process finished cluster 881. Wrote cluster_881_samples.csv and cluster_881_params.csv
2026-06-02 18:42:50,808 - cnv_pipe.batch.run_model - INFO - Cluster 881 finished in 214.24 seconds. Status: SUCCESS