File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/fbd0a487ccd013a808c30445f32f5f/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-jil1qpra because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:40:34,846 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:40:35,722 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:40:35,906 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:40:52,183 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:40:52,433 - cnv_pipe.batch.run_model - INFO - Processing cluster 1267 with 186 probes
2026-06-02 18:40:52,854 - cnv_pipe.batch.run_model.cluster1267 - INFO - Child process started for cluster 1267 with 186 probes
2026-06-02 18:44:40,807 - cnv_pipe.batch.run_model.cluster1267 - INFO - Child process finished cluster 1267. Wrote cluster_1267_samples.csv and cluster_1267_params.csv
2026-06-02 18:44:40,810 - cnv_pipe.batch.run_model - INFO - Cluster 1267 finished in 228.38 seconds. Status: SUCCESS