Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/c3ea7d1398eb3e19fc73c876e222bd/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/c3ea7d1398eb3e19fc73c876e222bd/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/c3ea7d1398eb3e19fc73c876e222bd/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/a494e8e980c0e7d8e3b4d352c11387/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/4370f8afa5d39078f6f3c51bc08a30/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/4370f8afa5d39078f6f3c51bc08a30/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-98oxsf9c because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:38:00,423 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:38:01,238 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:38:01,414 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:38:16,498 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:38:16,594 - cnv_pipe.batch.run_model - INFO - Processing cluster 81 with 187 probes
2026-06-02 18:38:17,043 - cnv_pipe.batch.run_model.cluster81 - INFO - Child process started for cluster 81 with 187 probes
2026-06-02 18:41:38,246 - cnv_pipe.batch.run_model.cluster81 - INFO - Child process finished cluster 81. Wrote cluster_81_samples.csv and cluster_81_params.csv
2026-06-02 18:41:38,248 - cnv_pipe.batch.run_model - INFO - Cluster 81 finished in 201.65 seconds. Status: SUCCESS