Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/85b140281e9b2950cd842c897b7042/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/716e4d192440629ce79f9537ef2f6d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/716e4d192440629ce79f9537ef2f6d/.command.sh
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-uo6bp6m9 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:38:02,684 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:38:03,497 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:38:03,684 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:38:19,474 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:38:19,750 - cnv_pipe.batch.run_model - INFO - Processing cluster 1196 with 184 probes
2026-06-02 18:38:20,132 - cnv_pipe.batch.run_model.cluster1196 - INFO - Child process started for cluster 1196 with 184 probes
2026-06-02 18:41:39,222 - cnv_pipe.batch.run_model.cluster1196 - INFO - Child process finished cluster 1196. Wrote cluster_1196_samples.csv and cluster_1196_params.csv
2026-06-02 18:41:39,225 - cnv_pipe.batch.run_model - INFO - Cluster 1196 finished in 199.47 seconds. Status: SUCCESS