File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/cb133c6254ae0e572a670eefe8c5b2/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-f5__ignx because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:36:35,856 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:36:36,645 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:36:36,811 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:36:51,756 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:36:51,962 - cnv_pipe.batch.run_model - INFO - Processing cluster 769 with 193 probes
2026-06-02 18:36:52,334 - cnv_pipe.batch.run_model.cluster769 - INFO - Child process started for cluster 769 with 193 probes
2026-06-02 18:40:22,963 - cnv_pipe.batch.run_model.cluster769 - INFO - Child process finished cluster 769. Wrote cluster_769_samples.csv and cluster_769_params.csv
2026-06-02 18:40:22,966 - cnv_pipe.batch.run_model - INFO - Cluster 769 finished in 211.00 seconds. Status: SUCCESS