Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/85b140281e9b2950cd842c897b7042/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/5bfa56c7c92e001b5ac5afd306d852/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/5bfa56c7c92e001b5ac5afd306d852/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-t4mykhrp because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:38:13,884 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:38:14,924 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:38:15,130 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:38:33,920 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:38:34,026 - cnv_pipe.batch.run_model - INFO - Processing cluster 1122 with 197 probes
2026-06-02 18:38:34,654 - cnv_pipe.batch.run_model.cluster1122 - INFO - Child process started for cluster 1122 with 197 probes
2026-06-02 18:42:57,945 - cnv_pipe.batch.run_model.cluster1122 - INFO - Child process finished cluster 1122. Wrote cluster_1122_samples.csv and cluster_1122_params.csv
2026-06-02 18:42:57,948 - cnv_pipe.batch.run_model - INFO - Cluster 1122 finished in 263.92 seconds. Status: SUCCESS