Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/85b140281e9b2950cd842c897b7042/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/fa41583c5ea428582902053a9dc04f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/fa41583c5ea428582902053a9dc04f/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-m0ajof2n because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:39:14,305 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:39:15,178 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:39:15,412 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:39:30,833 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:39:31,066 - cnv_pipe.batch.run_model - INFO - Processing cluster 1224 with 126 probes
2026-06-02 18:39:31,446 - cnv_pipe.batch.run_model.cluster1224 - INFO - Child process started for cluster 1224 with 126 probes
2026-06-02 18:41:49,556 - cnv_pipe.batch.run_model.cluster1224 - INFO - Child process finished cluster 1224. Wrote cluster_1224_samples.csv and cluster_1224_params.csv
2026-06-02 18:41:49,558 - cnv_pipe.batch.run_model - INFO - Cluster 1224 finished in 138.49 seconds. Status: SUCCESS