Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/85b140281e9b2950cd842c897b7042/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/9e426e0aafec2bdf42fb89a9438377/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/9e426e0aafec2bdf42fb89a9438377/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ps6qn1z0 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:39:02,175 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:39:02,979 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:39:03,154 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:39:18,353 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:39:18,442 - cnv_pipe.batch.run_model - INFO - Processing cluster 1212 with 36 probes
2026-06-02 18:39:18,892 - cnv_pipe.batch.run_model.cluster1212 - INFO - Child process started for cluster 1212 with 36 probes
2026-06-02 18:40:03,913 - cnv_pipe.batch.run_model.cluster1212 - INFO - Child process finished cluster 1212. Wrote cluster_1212_samples.csv and cluster_1212_params.csv
2026-06-02 18:40:03,914 - cnv_pipe.batch.run_model - INFO - Cluster 1212 finished in 45.47 seconds. Status: SUCCESS