File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1cc7134f41b4160b814fbd8bc8ea54/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-qe6i5xrw because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:37:17,162 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:37:17,944 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:37:18,115 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:37:32,902 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:37:33,089 - cnv_pipe.batch.run_model - INFO - Processing cluster 695 with 196 probes
2026-06-02 18:37:33,465 - cnv_pipe.batch.run_model.cluster695 - INFO - Child process started for cluster 695 with 196 probes
2026-06-02 18:41:04,522 - cnv_pipe.batch.run_model.cluster695 - INFO - Child process finished cluster 695. Wrote cluster_695_samples.csv and cluster_695_params.csv
2026-06-02 18:41:04,525 - cnv_pipe.batch.run_model - INFO - Cluster 695 finished in 211.44 seconds. Status: SUCCESS