File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/7953782f3e625e5c4e3c5561dc419f/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-t6peshoe because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:36:58,781 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:36:59,586 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:36:59,772 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:37:14,388 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:37:14,599 - cnv_pipe.batch.run_model - INFO - Processing cluster 885 with 186 probes
2026-06-02 18:37:14,976 - cnv_pipe.batch.run_model.cluster885 - INFO - Child process started for cluster 885 with 186 probes
2026-06-02 18:40:40,998 - cnv_pipe.batch.run_model.cluster885 - INFO - Child process finished cluster 885. Wrote cluster_885_samples.csv and cluster_885_params.csv
2026-06-02 18:40:41,002 - cnv_pipe.batch.run_model - INFO - Cluster 885 finished in 206.40 seconds. Status: SUCCESS