Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/85b140281e9b2950cd842c897b7042/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/e4d8a179dcfacf0a0e0233632f33c1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/e4d8a179dcfacf0a0e0233632f33c1/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-wl63soi2 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:38:59,092 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:38:59,901 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:39:00,069 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:39:16,253 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:39:16,339 - cnv_pipe.batch.run_model - INFO - Processing cluster 1190 with 196 probes
2026-06-02 18:39:16,881 - cnv_pipe.batch.run_model.cluster1190 - INFO - Child process started for cluster 1190 with 196 probes
2026-06-02 18:42:49,601 - cnv_pipe.batch.run_model.cluster1190 - INFO - Child process finished cluster 1190. Wrote cluster_1190_samples.csv and cluster_1190_params.csv
2026-06-02 18:42:49,604 - cnv_pipe.batch.run_model - INFO - Cluster 1190 finished in 213.26 seconds. Status: SUCCESS