Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/85b140281e9b2950cd842c897b7042/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/2a451b06b4a3e380f67e1a82095714/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/2a451b06b4a3e380f67e1a82095714/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-a29qdqyh because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:37:40,514 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:37:41,307 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:37:41,477 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:37:57,225 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:37:57,309 - cnv_pipe.batch.run_model - INFO - Processing cluster 1094 with 147 probes
2026-06-02 18:37:57,837 - cnv_pipe.batch.run_model.cluster1094 - INFO - Child process started for cluster 1094 with 147 probes
2026-06-02 18:40:47,366 - cnv_pipe.batch.run_model.cluster1094 - INFO - Child process finished cluster 1094. Wrote cluster_1094_samples.csv and cluster_1094_params.csv
2026-06-02 18:40:47,368 - cnv_pipe.batch.run_model - INFO - Cluster 1094 finished in 170.06 seconds. Status: SUCCESS