Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/85b140281e9b2950cd842c897b7042/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/0873701f3025f69bb2c1da1b8e089f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/0873701f3025f69bb2c1da1b8e089f/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-id5fp1gc because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:37:18,600 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:37:19,400 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:37:19,569 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:37:35,122 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:37:35,355 - cnv_pipe.batch.run_model - INFO - Processing cluster 983 with 148 probes
2026-06-02 18:37:35,738 - cnv_pipe.batch.run_model.cluster983 - INFO - Child process started for cluster 983 with 148 probes
2026-06-02 18:40:24,449 - cnv_pipe.batch.run_model.cluster983 - INFO - Child process finished cluster 983. Wrote cluster_983_samples.csv and cluster_983_params.csv
2026-06-02 18:40:24,452 - cnv_pipe.batch.run_model - INFO - Cluster 983 finished in 169.10 seconds. Status: SUCCESS