Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/85b140281e9b2950cd842c897b7042/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/cda2daeef88dda3c035988c10004de/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/cda2daeef88dda3c035988c10004de/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-5gnrnh8w because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:37:45,080 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:37:45,907 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:37:46,082 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:38:01,829 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:38:01,915 - cnv_pipe.batch.run_model - INFO - Processing cluster 1117 with 195 probes
2026-06-02 18:38:02,351 - cnv_pipe.batch.run_model.cluster1117 - INFO - Child process started for cluster 1117 with 195 probes
2026-06-02 18:41:35,775 - cnv_pipe.batch.run_model.cluster1117 - INFO - Child process finished cluster 1117. Wrote cluster_1117_samples.csv and cluster_1117_params.csv
2026-06-02 18:41:35,778 - cnv_pipe.batch.run_model - INFO - Cluster 1117 finished in 213.86 seconds. Status: SUCCESS