Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/85b140281e9b2950cd842c897b7042/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/16ca93b053ab3628b5d418852df010/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/b957bd6a52cdb9427da7ddeaa20761/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/b957bd6a52cdb9427da7ddeaa20761/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-fpskuo1w because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-02 18:39:02,500 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-02 18:39:03,303 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-02 18:39:03,485 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-02 18:39:19,152 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-02 18:39:19,357 - cnv_pipe.batch.run_model - INFO - Processing cluster 864 with 189 probes
2026-06-02 18:39:19,736 - cnv_pipe.batch.run_model.cluster864 - INFO - Child process started for cluster 864 with 189 probes
2026-06-02 18:42:44,550 - cnv_pipe.batch.run_model.cluster864 - INFO - Child process finished cluster 864. Wrote cluster_864_samples.csv and cluster_864_params.csv
2026-06-02 18:42:44,553 - cnv_pipe.batch.run_model - INFO - Cluster 864 finished in 205.20 seconds. Status: SUCCESS