File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/d84e0f80b53fc0644684219dbf9617/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-m2fdgql5 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:41:20,151 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:41:21,062 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:41:21,237 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:41:36,451 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-03 04:41:36,532 - cnv_pipe.batch.run_model - INFO - Processing cluster 1203 with 147 probes
2026-06-03 04:41:37,093 - cnv_pipe.batch.run_model.cluster1203 - INFO - Child process started for cluster 1203 with 147 probes
2026-06-03 04:44:13,843 - cnv_pipe.batch.run_model.cluster1203 - INFO - Child process finished cluster 1203. Wrote cluster_1203_samples.csv and cluster_1203_params.csv
2026-06-03 04:44:13,846 - cnv_pipe.batch.run_model - INFO - Cluster 1203 finished in 157.31 seconds. Status: SUCCESS