Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/655a5e8e00442492d221f5536ab6cf/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/655a5e8e00442492d221f5536ab6cf/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/c3d8bfb7b4fd5305aa317b2ea43fa9/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/655a5e8e00442492d221f5536ab6cf/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/1c3fa2f8da137e9fff19b68a9fbb06/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/1c3fa2f8da137e9fff19b68a9fbb06/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-oe0gznde because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:37:49,148 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:37:49,966 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:37:50,141 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:38:04,655 - cnv_pipe.batch.run_model - INFO - Loaded data with 72 samples
2026-06-03 04:38:04,838 - cnv_pipe.batch.run_model - INFO - Processing cluster 91 with 191 probes
2026-06-03 04:38:05,254 - cnv_pipe.batch.run_model.cluster91 - INFO - Child process started for cluster 91 with 191 probes
2026-06-03 04:41:19,782 - cnv_pipe.batch.run_model.cluster91 - INFO - Child process finished cluster 91. Wrote cluster_91_samples.csv and cluster_91_params.csv
2026-06-03 04:41:19,787 - cnv_pipe.batch.run_model - INFO - Cluster 91 finished in 194.95 seconds. Status: SUCCESS