.command.sh - Workdir - GERMLINE_CNV:AggregateBatchPerSampleData (1029_BA0-N2-BDNA-1_2375WFLT3_s20)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/13dca04b632897aebb51cb86c69d22/.command.sh
Size: 301 bytes
Task: GERMLINE_CNV:AggregateBatchPerSampleData (1029_BA0-N2-BDNA-1_2375WFLT3_s20)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe aggregate-sample-data \
    1029_BA0-N2-BDNA-1_2375WFLT3_s20 \
    clusters/ \
    counts_1.parquet \
    altera_v3_panel.bed \
    altera_v3_blacklist.bed \
    clustered_panel.csv \
    ploidy_1.parquet \
    1029_BA0-N2-BDNA-1_2375WFLT3_s20_probe_sample.parquet