mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-tcy_h4gu because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:47:58,498 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:47:59,576 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:47:59,782 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:48:24,979 - cnv_pipe.batch.run_model - INFO - Loaded data with 87 samples
2026-06-03 04:48:25,259 - cnv_pipe.batch.run_model - INFO - Processing cluster 53 with 158 probes
2026-06-03 04:48:25,779 - cnv_pipe.batch.run_model.cluster53 - INFO - Child process started for cluster 53 with 158 probes
2026-06-03 04:52:07,423 - cnv_pipe.batch.run_model.cluster53 - INFO - Child process finished cluster 53. Wrote cluster_53_samples.csv and cluster_53_params.csv
2026-06-03 04:52:07,426 - cnv_pipe.batch.run_model - INFO - Cluster 53 finished in 222.17 seconds. Status: SUCCESS