mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-_nrgynuf because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:50:58,911 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:50:59,760 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:50:59,929 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:51:23,057 - cnv_pipe.batch.run_model - INFO - Loaded data with 87 samples
2026-06-03 04:51:23,145 - cnv_pipe.batch.run_model - INFO - Processing cluster 987 with 186 probes
2026-06-03 04:51:23,558 - cnv_pipe.batch.run_model.cluster987 - INFO - Child process started for cluster 987 with 186 probes
2026-06-03 04:55:02,624 - cnv_pipe.batch.run_model.cluster987 - INFO - Child process finished cluster 987. Wrote cluster_987_samples.csv and cluster_987_params.csv
2026-06-03 04:55:02,630 - cnv_pipe.batch.run_model - INFO - Cluster 987 finished in 219.49 seconds. Status: SUCCESS