mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-nocxltlr because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:47:59,850 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:48:00,656 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:48:00,823 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:48:23,009 - cnv_pipe.batch.run_model - INFO - Loaded data with 87 samples
2026-06-03 04:48:23,250 - cnv_pipe.batch.run_model - INFO - Processing cluster 70 with 177 probes
2026-06-03 04:48:23,672 - cnv_pipe.batch.run_model.cluster70 - INFO - Child process started for cluster 70 with 177 probes
2026-06-03 04:51:50,414 - cnv_pipe.batch.run_model.cluster70 - INFO - Child process finished cluster 70. Wrote cluster_70_samples.csv and cluster_70_params.csv
2026-06-03 04:51:50,419 - cnv_pipe.batch.run_model - INFO - Cluster 70 finished in 207.17 seconds. Status: SUCCESS