mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-uakdx_jy because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:49:24,042 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:49:24,823 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:49:24,991 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:49:45,920 - cnv_pipe.batch.run_model - INFO - Loaded data with 87 samples
2026-06-03 04:49:45,999 - cnv_pipe.batch.run_model - INFO - Processing cluster 488 with 157 probes
2026-06-03 04:49:46,367 - cnv_pipe.batch.run_model.cluster488 - INFO - Child process started for cluster 488 with 157 probes
2026-06-03 04:52:36,849 - cnv_pipe.batch.run_model.cluster488 - INFO - Child process finished cluster 488. Wrote cluster_488_samples.csv and cluster_488_params.csv
2026-06-03 04:52:36,851 - cnv_pipe.batch.run_model - INFO - Cluster 488 finished in 170.85 seconds. Status: SUCCESS