Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/d03b578e25999b1cf8c227a4071696/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/c7617d268f7282ce8f00eca4d78ab4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/c7617d268f7282ce8f00eca4d78ab4/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-wzmlpxf6 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:49:59,408 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:50:00,188 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:50:00,357 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:50:22,175 - cnv_pipe.batch.run_model - INFO - Loaded data with 87 samples
2026-06-03 04:50:22,381 - cnv_pipe.batch.run_model - INFO - Processing cluster 670 with 151 probes
2026-06-03 04:50:22,754 - cnv_pipe.batch.run_model.cluster670 - INFO - Child process started for cluster 670 with 151 probes
2026-06-03 04:53:12,041 - cnv_pipe.batch.run_model.cluster670 - INFO - Child process finished cluster 670. Wrote cluster_670_samples.csv and cluster_670_params.csv
2026-06-03 04:53:12,044 - cnv_pipe.batch.run_model - INFO - Cluster 670 finished in 169.66 seconds. Status: SUCCESS