Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/d03b578e25999b1cf8c227a4071696/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1a570e80bede87829316c5e6d07b9e/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/7d4059383c45ab87c1596aef873d70/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/7d4059383c45ab87c1596aef873d70/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-nq54esem because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-03 04:50:56,989 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-03 04:50:58,358 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-03 04:50:58,611 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-03 04:51:30,010 - cnv_pipe.batch.run_model - INFO - Loaded data with 87 samples
2026-06-03 04:51:30,287 - cnv_pipe.batch.run_model - INFO - Processing cluster 956 with 191 probes
2026-06-03 04:51:30,873 - cnv_pipe.batch.run_model.cluster956 - INFO - Child process started for cluster 956 with 191 probes
2026-06-03 04:55:49,546 - cnv_pipe.batch.run_model.cluster956 - INFO - Child process finished cluster 956. Wrote cluster_956_samples.csv and cluster_956_params.csv
2026-06-03 04:55:49,550 - cnv_pipe.batch.run_model - INFO - Cluster 956 finished in 259.26 seconds. Status: SUCCESS